View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20343_high_5 (Length: 285)
Name: NF20343_high_5
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 27436441 - 27436183
Alignment:
| Q |
18 |
attcctaacaggggtaaccgctcctttttctctccaatcgaaatcacgaggaaggttctctgttgaaagaataggtgcagcttttgcatgtctcggtaac |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27436441 |
attcctaaccggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggtcgaaagaataggtgcagcttttgcatgtctcggtaac |
27436342 |
T |
|
| Q |
118 |
cctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcagagaatcttgtaacaccatgagttgcggaaggatccattatcccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27436341 |
cctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcggagaatcttgtaacaccatgagttgctgaaggatccattatcccat |
27436242 |
T |
|
| Q |
218 |
gtctcttagcacggtgaaggttagacttgaagacattgaacctataatcatgttcatct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27436241 |
gtctcttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttcatct |
27436183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 27944933 - 27944675
Alignment:
| Q |
18 |
attcctaacaggggtaaccgctcctttttctctccaatcgaaatcacgaggaaggttctctgttgaaagaataggtgcagcttttgcatgtctcggtaac |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27944933 |
attcctaaccggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggacgaaagaataggtgcagcttttgcatgtctcggtaac |
27944834 |
T |
|
| Q |
118 |
cctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcagagaatcttgtaacaccatgagttgcggaaggatccattatcccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27944833 |
cctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcggagaatcttgtaacaccatgagttgctgaaggatccattatcccat |
27944734 |
T |
|
| Q |
218 |
gtctcttagcacggtgaaggttagacttgaagacattgaacctataatcatgttcatct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27944733 |
gtctcttagcacggtgaaggttagacttgaagacattgaacctataatcatgttcatct |
27944675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 27549795 - 27550053
Alignment:
| Q |
18 |
attcctaacaggggtaaccgctcctttttctctccaatcgaaatcacgaggaaggttctctgttgaaagaataggtgcagcttttgcatgtctcggtaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549795 |
attcctaacaggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggacgaaagaataggtgcagcttttgcatgtctcggtaac |
27549894 |
T |
|
| Q |
118 |
cctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcagagaatcttgtaacaccatgagttgcggaaggatccattatcccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
27549895 |
cctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcggagaatcttgtaacaccatgagttgccgaaggatccattatcacat |
27549994 |
T |
|
| Q |
218 |
gtctcttagcacggtgaaggttagacttgaagacattgaacctataatcatgttcatct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27549995 |
gtctcttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttcatct |
27550053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 275
Target Start/End: Complemental strand, 26765173 - 26764929
Alignment:
| Q |
31 |
gtaaccgctcctttttctctccaatcgaaatcacgaggaaggttctctgttgaaagaataggtgcagcttttgcatgtctcggtaaccctactcctttta |
130 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| ||||| || ||||| | |||||| || || || || |||| | |||| ||||| || ||| | | |
|
|
| T |
26765173 |
gtaacggctcctttctctctccaatcaaaatccttgggaagattatctgtcggaagaatcggggctgcattagcatctttcggcaaccccacccctctca |
26765074 |
T |
|
| Q |
131 |
atcccaagatgctattacgaaactccctcggagtaagatcagagaatcttgtaacaccatgagttgcggaaggatccattatcccatgtctcttagcacg |
230 |
Q |
| |
|
||||||| | ||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||| || ||||||||||| | ||| ||||||||||| |
|
|
| T |
26765073 |
atcccaaaacgctcttacgaaactctctcggggtaagatcggagaatcttgtaacaccgtgaaccgccgaaggatccatcaattgatgcctcttagcacg |
26764974 |
T |
|
| Q |
231 |
gtgaaggttagacttgaagacattgaacctataatcatgttcatc |
275 |
Q |
| |
|
|| || ||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
26764973 |
gttcagattagacttgaagattttaaacctgtaatcatgttcatc |
26764929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University