View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20343_high_9 (Length: 235)
Name: NF20343_high_9
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36140070 - 36140292
Alignment:
| Q |
1 |
cacttacaacttggtggtaagccagaaaagtgtg--atttataagatgtgaatctaatggtgctgacagatatgtaaattaatgagggcatagattctca |
98 |
Q |
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| T |
36140070 |
cacttacaacttggtggtaagccagaaaagtgtgtgatttataagatgtgaatctaatggtgctgacagatatgtaaattaatgagggcatagattctca |
36140169 |
T |
|
| Q |
99 |
ggtccagtttatagaactggataagagattaggaatatggaaatataggaaaaaacggcagaattagaaacaacacccttcattaatgggaatataaccc |
198 |
Q |
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| T |
36140170 |
ggtccagtttata-aactggataagagattaggaatatggaaatataggaaaaaacggcagaataagaaacaacacccttcattaatgggaatataaccc |
36140268 |
T |
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| Q |
199 |
caccctcaaactcactccctctct |
222 |
Q |
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||||||||||||||| | |||||| |
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| T |
36140269 |
caccctcaaactcaccctctctct |
36140292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 30820828 - 30820929
Alignment:
| Q |
89 |
tagattctcaggtccagtttatagaactggataagagattaggaatatggaaat-ataggaaaaaacggcagaattagaaacaacacccttcattaatgg |
187 |
Q |
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||||||||||| ||||||| |||||| ||||| ||||||||||||| || ||| |||| || || | ||||||| ||||||||||||||||||||||| |
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| T |
30820828 |
tagattctcagatccagttaatagaaatggat--gagattaggaataagggaatcatagaaagaagcagcagaataggaaacaacacccttcattaatgg |
30820925 |
T |
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| Q |
188 |
gaat |
191 |
Q |
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|||| |
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| T |
30820926 |
gaat |
30820929 |
T |
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