View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20343_low_1 (Length: 549)
Name: NF20343_low_1
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_low_1 |
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| [»] scaffold0831 (2 HSPs) |
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Alignment Details
Target: scaffold0831 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 368 - 533
Target Start/End: Complemental strand, 5198 - 5033
Alignment:
| Q |
368 |
ttgtttcgattaagactgaatatttgatgcaaaagtgtgatttgtttttgatatgatttgtttatactgttgaaacataaatggttgtttatacatctgt |
467 |
Q |
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| T |
5198 |
ttgttttgattaagactgaatatttgatgcagaagtgtgatttgtttttgatatgatttgtttatactgttgaaacataaatggttgtttatacatctgt |
5099 |
T |
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| Q |
468 |
acaaccaaaatagtcattgaaaagatgttttctgagatatatgttccaatcagtagtagtacatta |
533 |
Q |
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| T |
5098 |
acaaccaaaatagtcattgaaaagatgttttctgatatatatgttccaatcagtagtagtacatta |
5033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 5451 - 5261
Alignment:
| Q |
178 |
tggagaagtagacaattaattggtttttgtagtcaaagca---agttttattaaacaataggaagtagtacttgtttggtttccctggttttattttaat |
274 |
Q |
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| T |
5451 |
tggagaagtagacaattaattggtttt-gtagtcaaagcataaagttttattaaacaataggaagtagtacttgtttggtttccctggttttattttaat |
5353 |
T |
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| Q |
275 |
gcttattatctttctatgacatattggattgatatttaattagttctccttttacggacgagctcttccgtgtaccagatatttcaggaaacattg |
370 |
Q |
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| T |
5352 |
gcttattatctttctatgacatgttggattgatat----ttagttctccttttacggacgagctcttccctgtaccatatatttcaggaaacattg |
5261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 17392134 - 17392183
Alignment:
| Q |
217 |
aagttttattaaacaataggaagtagtacttgtttggtttccctggtttt |
266 |
Q |
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| T |
17392134 |
aagttttattaaacaataggaagtagtacttgtttggtttccctggtttt |
17392183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 17417803 - 17417770
Alignment:
| Q |
421 |
tgatttgtttatactgttgaaacataaatggttg |
454 |
Q |
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| T |
17417803 |
tgatttgtttatattgttgaaacataaatggttg |
17417770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 27230187 - 27230073
Alignment:
| Q |
101 |
gtgattgaggagattgattttaaaggagacagtaagaattgtctaatcctaccttacaagaaaaactttggtacaattggagaagtagacaattaattgg |
200 |
Q |
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| T |
27230187 |
gtgattgaggagatcggttttaaaagagaaattcatatttgtcaaatagtacattacaagaaaaaccttggtccaattggaggaataaacagttaatt-g |
27230089 |
T |
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| Q |
201 |
tttttgtagtcaaagc |
216 |
Q |
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| T |
27230088 |
cttttgtagtcaaagc |
27230073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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