View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20343_low_2 (Length: 462)
Name: NF20343_low_2
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 22416013 - 22416444
Alignment:
| Q |
17 |
aatccaacggttggaaatgatgttgatgaaaaattggataagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggttg |
116 |
Q |
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| T |
22416013 |
aatccaacggttggaaatgatgttgatgaaaaattggataagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggctg |
22416112 |
T |
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| Q |
117 |
atcgtgctaaagagttagtgcaattgatggatgagaagggtgtggaagttgtcaaagattttcaggaagaaggttttcatggggttgagttttttgagcc |
216 |
Q |
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| T |
22416113 |
atcgtgctaaagagttagtgcaattgatggatgagaagggtgtggaagttgtcaaagattttcaggaagaaggttttcatggggttgagttttttgagcc |
22416212 |
T |
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| Q |
217 |
atccaaagcaaagaaatttattaagttagtgaagggcttcatttccactttcgatgcttagagtcataacaagtatgaacgtttctttgccacttcaatt |
316 |
Q |
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| T |
22416213 |
atccaaagcaaagaaatttattaagttagtgaagggcttcatttccactttcgatgcttagagtcataacaagtatgaacgtttctttgccacttcaatt |
22416312 |
T |
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| Q |
317 |
attgttgtttatttgaaggtgtactatggatctacaataaaggtcgtgtttggagacacaaataagcattggacttaccaaaacaacttaattcttaatt |
416 |
Q |
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| T |
22416313 |
attgttgtttatttgaaggtgtactatggatctacaataaaggtcgtgtttggagacacaaataagcattggacttaccaaaacaacttaattcttaatt |
22416412 |
T |
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| Q |
417 |
ttagatccttggagttgtcgcttactatgata |
448 |
Q |
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| T |
22416413 |
ttagatccttggagttgtcgcttactatgata |
22416444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 25 - 347
Target Start/End: Original strand, 22400187 - 22400507
Alignment:
| Q |
25 |
ggttggaaatgatgttgatgaaaaattggataagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggttgatcgtgct |
124 |
Q |
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|||||| |||| ||||||||||||| | | |||||| |||||||| | ||||||||| ||||||||||| || ||||| |||| ||||||||||||| | |
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| T |
22400187 |
ggttgggaatggtgttgatgaaaaacttgctaagattaaggatcatgagtggagggtgttggtgagtatgaatggtggagatccattggttgatcgtaat |
22400286 |
T |
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| Q |
125 |
aaagagttagtgcaattgatggatgagaagggtgtggaagttgtcaaagattttcaggaagaaggttttcatggggttgagttttttgagccatccaaag |
224 |
Q |
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| T |
22400287 |
aaggagttggtgaaattgttggaggaaaagggtgtggaagtggtgaaggattttcaagaagatggttttcatggagttgagttttttgagctatccaaag |
22400386 |
T |
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| Q |
225 |
caaagaaatttattaagttagtgaagggcttcatttccactttcgatgcttagagtcataacaagtatgaacgtttctttgcca-cttcaattattgttg |
323 |
Q |
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| T |
22400387 |
caaagaactttattgaggtggtgaaaggtttcatctcctagttcgatgcttagggtc--aacatgtttg-acgtttctttgctaccttgaattattttcc |
22400483 |
T |
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| Q |
324 |
tttatttgaaggtgtactatggat |
347 |
Q |
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|||||||||| ||||| ||||||| |
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| T |
22400484 |
tttatttgaacgtgtattatggat |
22400507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 22496377 - 22496540
Alignment:
| Q |
98 |
ggtggggatctattggttgatcgtgctaaagagttagtgcaattgatggatgagaagggtgtggaagttgtcaaagattttcaggaagaaggttttcatg |
197 |
Q |
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|||||||||| | |||||||||||| |||||||| | ||||||||||| || |||||||| | ||||| ||||| ||| | ||||| |||| ||||| |
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| T |
22496377 |
ggtggggatccagtggttgatcgtgagaaagagttggcacaattgatggaggaaaagggtgttcatgttgtgaaagactttgatgaagatggttgtcatg |
22496476 |
T |
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| Q |
198 |
gggttgagttttttgagccatccaaagcaaagaaatttattaagttagtgaagggcttcatttc |
261 |
Q |
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| T |
22496477 |
gaatagagtattatgatccattgaaggctaagaaattgattgagttaattaagggtttcatttc |
22496540 |
T |
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