View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20343_low_4 (Length: 333)
Name: NF20343_low_4
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 6994163 - 6993881
Alignment:
| Q |
4 |
atcatcatcatcaccacctcccaattcaaaactgcattaataactccttcggtgagttttggcagttgtggcagttgagtgcataacactaacactacca |
103 |
Q |
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| T |
6994163 |
atcatcatcatcaccacctcccaattcaaaattgcattaataactccttcggtgagttttggcagttgtggcagttgagtgcataacactaacactacca |
6994064 |
T |
|
| Q |
104 |
cactcttcctctaattaatgcactacctcaatcccaccaattcccttcatacacatttaatgttttgtcacaaaattttcacttcaattccaaaacaaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6994063 |
cactcttcctctaattaatgcactacctcaatcccaccaattcccttcatacacatttaatgttttgtcacaaaattttcacttcaattccaaaacaaca |
6993964 |
T |
|
| Q |
204 |
ctc-nnnnnnngtcacaaccatattttatccattccatccttaaaccttgatggttgtgttttatgaagacaactactcatat |
285 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993963 |
ctcttttttttgtcacaaccatattttatccattccatccttaaaccttgatggttgtgttttatgaagacaactactcatat |
6993881 |
T |
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