View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20343_low_5 (Length: 304)
Name: NF20343_low_5
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_low_5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 50247854 - 50247564
Alignment:
| Q |
14 |
aaaataaagaagataaaaacgataatgcaattattgttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaac |
113 |
Q |
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| T |
50247854 |
aaaataaagaagataaaaacgataatgcaattattgttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaac |
50247755 |
T |
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| Q |
114 |
gtatcagcatactctaaaaacccataatctttactcttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaag |
213 |
Q |
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| T |
50247754 |
gtatcagcatactctaaaaacccataatctttactcttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaag |
50247655 |
T |
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| Q |
214 |
caatttccttcaacttggtcttatgaagcccatatttctctacaatcaagtcccaaacctcacccttgtcacgcatcaactcaacgatatc |
304 |
Q |
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| T |
50247654 |
caatttccttcaacttggtcttatgaagcccatatttctctacaatcaagtcccaaacctcacccttgtcacgcatcaactcaatgatatc |
50247564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 295
Target Start/End: Original strand, 27643048 - 27643318
Alignment:
| Q |
26 |
ataaaaacgataatgcaatt-attgttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcata |
124 |
Q |
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| T |
27643048 |
ataaaaacaacaatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcata |
27643147 |
T |
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| Q |
125 |
ctctaaaaacccataatctttactcttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttc |
224 |
Q |
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| T |
27643148 |
ctcaaagaacccataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctcc |
27643247 |
T |
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| Q |
225 |
aacttggtcttatgaagcccatatttctctacaatcaagtcccaaacctcacccttgtcacgcatcaactc |
295 |
Q |
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| T |
27643248 |
aatttggtcttatgaagcccatattcctccacaatcaggtcccaaatctcacccttatcacgcattaactc |
27643318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 59 - 294
Target Start/End: Complemental strand, 50254946 - 50254711
Alignment:
| Q |
59 |
gggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttactcttgttcata |
158 |
Q |
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| T |
50254946 |
gggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatttttactcttattcata |
50254847 |
T |
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| Q |
159 |
ctagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatgaagcccatatttctctacaa |
258 |
Q |
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||||||||| ||||||||||||| || | ||||||||||| ||| ||||| ||||||||||||| ||| |||||||||||||| ||||| | ||| |||| |
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| T |
50254846 |
ctagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatgaagtccatactcctccacaa |
50254747 |
T |
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| Q |
259 |
tcaagtcccaaacctcacccttgtcacgcatcaact |
294 |
Q |
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| T |
50254746 |
tctgatcccaaacctcacccttatcacgcataaact |
50254711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 27646262 - 27646325
Alignment:
| Q |
34 |
gataatgcaatt-attgttggtaggagggtataagtttcatctccctcagcttagccacccaga |
96 |
Q |
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| T |
27646262 |
gataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccaga |
27646325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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