View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20343_low_9 (Length: 237)
Name: NF20343_low_9
Description: NF20343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20343_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35397212 - 35396992
Alignment:
| Q |
1 |
ttaagaaaggtgggaacctggtatttattagttctgaaagtactgcatgagttacaaaaacaaacattagaaatcagcgatatttgttttttaacacttt |
100 |
Q |
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| T |
35397212 |
ttaagaaaggtgggaacctggtatttattagttctgaaagtactgcatgagttacaaaaacaaacattagaaatcagcgatatttgttttttaacacttt |
35397113 |
T |
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| Q |
101 |
gttagaaagccatgacagaaattttgcattacgaatgcaatcaaatggaatactcaaacttaagttcagaatatttgcattaacctctttgagtaagtta |
200 |
Q |
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| T |
35397112 |
gttagaaagccatgacagaaattttgcattacgaatgcaatcaaatggaatactcaaacttaagttcagaatatttgcattaacctctttgagtaagtta |
35397013 |
T |
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| Q |
201 |
atatagcatgcaggaagaatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35397012 |
atatagcatgcaggaagaatg |
35396992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 11374949 - 11374747
Alignment:
| Q |
1 |
ttaagaaaggtgggaacctggtatttattagttctgaaagtactgcatgagttacaaaaacaaacattagaaatcagcgatatttgttttttaacacttt |
100 |
Q |
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| T |
11374949 |
ttaagaaaggtgggaacttggtatttcttttttgtgat-gtactgcatgagttacaaaaacaaacattagaaataagccatatttgttatttaacaattt |
11374851 |
T |
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| Q |
101 |
gttagaaagccatgacagaaattttgcattacgaatgcaatcaaatggaatactcaaacttaagttcagaatatttgcattaacctctttgagtaagtta |
200 |
Q |
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| T |
11374850 |
atttgaaagccatgacagaaactttgcattacgaatgcaatcaaatggaatgcttgaacttaagttcagaatatttgcactgaccactttgagtaagtca |
11374751 |
T |
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| Q |
201 |
atat |
204 |
Q |
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|||| |
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| T |
11374750 |
atat |
11374747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 11378083 - 11377991
Alignment:
| Q |
38 |
aagtactgcatgagttacaaaaacaaacattagaaatcagcgatatttgttttttaacactttgttagaaagcca-tgacagaaattttgcatta |
131 |
Q |
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||||||||||| |||||||||||||||||||||||||||| | || || |||||| ||||||||||||||||| ||| ||||| ||||||||| |
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| T |
11378083 |
aagtactgcataagttacaaaaacaaacattagaaatcagaaaaatctg--ttttaaaactttgttagaaagccattgatagaaactttgcatta |
11377991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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