View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20344_high_7 (Length: 340)
Name: NF20344_high_7
Description: NF20344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20344_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 20670857 - 20670538
Alignment:
| Q |
1 |
agggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtaggtatacgagagtaacgagggaggaggaggaggtcagtgt |
100 |
Q |
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| T |
20670857 |
agggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtagggatacgagagtaacgagggaggaggaggaggtcagcgt |
20670758 |
T |
|
| Q |
101 |
agacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgagggatgaagagtgttaggctaag |
200 |
Q |
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| T |
20670757 |
agacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgaggaatgaagagtgttaggctaag |
20670658 |
T |
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| Q |
201 |
tgatggatgtgagattgataagatgcttacccatttgtttacgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttcttgcattgcc |
300 |
Q |
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| T |
20670657 |
tgatggatgggagattgataagatgcttacccatttgtttatgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttcttgcattgcc |
20670558 |
T |
|
| Q |
301 |
aatggtggagttgatgatgt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
20670557 |
aatggtggagttgatgatgt |
20670538 |
T |
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