View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20345_high_1 (Length: 704)

Name: NF20345_high_1
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20345_high_1
NF20345_high_1
[»] chr1 (9 HSPs)
chr1 (13-418)||(32502894-32503293)
chr1 (508-686)||(32502630-32502804)
chr1 (231-354)||(32022616-32022741)
chr1 (176-327)||(48611676-48611829)
chr1 (178-352)||(19940548-19940723)
chr1 (231-324)||(34663092-34663185)
chr1 (234-303)||(45485044-45485113)
chr1 (234-309)||(4941199-4941274)
chr1 (183-310)||(1408615-1408741)
[»] chr2 (6 HSPs)
chr2 (229-353)||(9521064-9521182)
chr2 (201-348)||(27322708-27322854)
chr2 (231-311)||(9116405-9116485)
chr2 (231-304)||(16634421-16634494)
chr2 (229-298)||(3037421-3037490)
chr2 (179-217)||(19679448-19679486)
[»] chr3 (8 HSPs)
chr3 (203-354)||(8936054-8936205)
chr3 (231-311)||(43178597-43178677)
chr3 (352-418)||(4395315-4395381)
chr3 (231-327)||(42388719-42388815)
chr3 (184-327)||(36563038-36563180)
chr3 (231-311)||(1294908-1294988)
chr3 (184-327)||(36545134-36545276)
chr3 (111-177)||(4395256-4395323)
[»] chr8 (8 HSPs)
chr8 (177-353)||(9799198-9799375)
chr8 (231-348)||(40995823-40995942)
chr8 (229-298)||(7222846-7222913)
chr8 (178-311)||(30478408-30478540)
chr8 (234-301)||(45397512-45397578)
chr8 (230-311)||(12000142-12000223)
chr8 (308-353)||(35467786-35467831)
chr8 (234-326)||(15111876-15111968)
[»] scaffold0272 (1 HSPs)
scaffold0272 (178-348)||(6063-6235)
[»] chr4 (9 HSPs)
chr4 (177-354)||(19328775-19328950)
chr4 (352-418)||(18049945-18050011)
chr4 (229-326)||(27756450-27756547)
chr4 (234-311)||(3913647-3913724)
chr4 (234-354)||(38509880-38510000)
chr4 (111-177)||(18050003-18050070)
chr4 (230-292)||(4687363-4687425)
chr4 (234-311)||(3427861-3427938)
chr4 (234-292)||(25474657-25474715)
[»] chr7 (5 HSPs)
chr7 (231-327)||(30486952-30487048)
chr7 (184-311)||(37720509-37720635)
chr7 (229-324)||(28710390-28710485)
chr7 (374-418)||(22891022-22891066)
chr7 (174-218)||(40234663-40234707)
[»] chr5 (11 HSPs)
chr5 (201-348)||(28988361-28988512)
chr5 (183-347)||(21067574-21067739)
chr5 (205-354)||(24233126-24233277)
chr5 (231-300)||(39753318-39753387)
chr5 (229-302)||(19187144-19187217)
chr5 (174-303)||(36603640-36603769)
chr5 (201-321)||(14122887-14123006)
chr5 (229-301)||(1179953-1180025)
chr5 (234-298)||(38282505-38282569)
chr5 (229-310)||(39031661-39031741)
chr5 (254-326)||(6677065-6677137)
[»] scaffold0316 (1 HSPs)
scaffold0316 (176-311)||(1280-1415)
[»] chr6 (1 HSPs)
chr6 (229-303)||(17170671-17170745)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 32503293 - 32502894
Alignment:
Q  13 cagagaataatggtcgtacaaaatagagaaaatgaattacaaagtgatataccaaatgcatnnnnnnntcttatcttagcccgcgcttatgattcaaggg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||| |||||||||||||||    
T  32503293 cagagaataatggtcgtacaaaatagagaaaatgaattacaaagtgatataccaaatgcataaaaaaatattatcttagcccgcccttatgattcaaggg 32503194  T
Q  113 tgttgttgtttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaatgggtgatgttaaccggtgccctaggggcactggtt 212  Q
    | |||||||||||||||||||||||||||||||||  |||  ||||||||||||||||| |||||| ||||||||||| |||||||  | | ||||| ||    
T  32503193 tattgttgtttcatttagaacaaatctcaagagctatatacggtctacacgtatatttcccaaatgagtgatgttaactggtgccc-cgagacactgatt 32503095  T
Q  213 aaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttgg 312  Q
    ||| |||||       |||| ||||||||||||||||| |||||||||| |||| |||| ||||||||||||||| |||||   |||||||||||||||     
T  32503094 aagaaaactaaaaaaagaaaattttaaaataaaagtaatactttttatattttttaaaaattgacagcacaaattccaatg---tacttaccacatttga 32502998  T
Q  313 ctctttaaccagtgctcggggcactggttaacattatcctttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtag 412  Q
    ||| ||||| | ||| |   ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32502997 ctccttaactaatgccc--cgcattggttaacattatccttcgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaatagatgtag 32502900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 508 - 686
Target Start/End: Complemental strand, 32502804 - 32502630
Alignment:
Q  508 ctttggttaaatacattgacagtatgtgacatatatacaatatggttgaaaatgcagattttctctgatgtttacattatataatgctaataatgtagaa 607  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32502804 ctttggttaaatacattgacagtatgtgacatatataca---tggttgaaaatgcagattttctctgatgtttacattatataatgctaataatgtagaa 32502708  T
Q  608 ttgaacaaaatatttgacttgccgagaggatttgatacattgacacaatgcatattccttgaaagttggagacagggaa 686  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32502707 ttcaacaaa-tatttgacttgccgagaggatttgatacattgacacaatgcatattccttgaaagttggagacaaggaa 32502630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 32022616 - 32022741
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg--ct 328  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||  |     
T  32022616 aagttttaaaataaaagtaatactttttatacttttaaaaagttgacagtacaattttcaatgtaatacttaccacatttgactccttaaccagtgcccc 32022715  T
Q  329 cggggcactggttaacattatccttt 354  Q
    ||| ||||||||||||||||||||||    
T  32022716 cggagcactggttaacattatccttt 32022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 48611676 - 48611829
Alignment:
Q  176 atgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttg 275  Q
    |||||| ||||||||||||| |   |||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||| |||||||     
T  48611676 atgggtcatgttaaccggtgtctacggggcactggttaaggaaactaaaaaaagatagttttaaaataaaagtaacactttttatacttttgaaaagtta 48611775  T
Q  276 acagcacaaatttcaatgtaatact--taccacatttggctctttaaccagtgc 327  Q
    ||| ||||| || ||||||| ||||  ||| ||||||| |||||||| ||||||    
T  48611776 acaacacaagttgcaatgtagtacttatactacatttgactctttaatcagtgc 48611829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 178 - 352
Target Start/End: Original strand, 19940548 - 19940723
Alignment:
Q  178 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 277  Q
    |||| ||||||||||||||||  |||||||||||||||||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||    
T  19940548 gggtcatgttaaccggtgcccccggggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgac 19940646  T
Q  278 agcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctc--ggggcactggttaacattatcct 352  Q
    |||| || |||||||| ||||||||| |||||||  || ||||||||||| |  ||||||| |||||||||| ||||    
T  19940647 agcataagtttcaatgcaatacttactacatttgattccttaaccagtgccccgggggcaccggttaacattttcct 19940723  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 34663185 - 34663092
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccag 324  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| |||| || ||||  ||||||||||||||||| ||| ||||||||    
T  34663185 aagttttaaaatgaaagtaacactttttatacttttgaaaagttgacagtacaagttccaatacaatacttaccacatttgactccttaaccag 34663092  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 45485044 - 45485113
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttac 303  Q
    ||||||||||||| |||||| |||||| ||||| | ||||||||| |||||||||||||| |||||||||    
T  45485044 ttttaaaataaaaataacacattttatgctttttagaagttgacaacacaaatttcaatgcaatacttac 45485113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 4941199 - 4941274
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatt 309  Q
    ||||||||||||| ||||||||||||| ||||| |  |||||||| ||||| |||||||| |||| |||| |||||    
T  4941199 ttttaaaataaaaataacactttttatgcttttgaggagttgacaacacaagtttcaatgcaataattactacatt 4941274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 1408741 - 1408615
Alignment:
Q  183 atgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcac 282  Q
    |||||||||  |||||| || ||| ||||||||||||||       |||||||||||||| ||| ||| |||||||||  |||| || |||||||| |||    
T  1408741 atgttaaccaatgccct-ggtgcattggttaaggaaactaaaaaaagaaagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacac 1408643  T
Q  283 aaatttcaatgtaatacttaccacattt 310  Q
    || || |||||||| | |||| ||||||    
T  1408642 aagttccaatgtaaaaattactacattt 1408615  T

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Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 9521064 - 9521182
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgct 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||         
T  9521064 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaagtttcaatgtaatacttatcacatttgactccttaacca----- 9521158  T
Q  329 cggggcactggttaacattatcctt 353  Q
     ||||||||||||||||||||||||    
T  9521159 -ggggcactggttaacattatcctt 9521182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 27322854 - 27322708
Alignment:
Q  201 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 300  Q
    |||||||||||||||||||||       | |||||  ||||||||||||| ||||||||| |||||||| |||||||||||||| || ||||| ||||||    
T  27322854 ggggcactggttaaggaaactaaaaaaaggaagttcgaaaataaaagtaatactttttatgcttttcaagagttgacagcacaagttccaatgcaatact 27322755  T
Q  301 taccacatttggctctttaaccagtgctcggggcactggttaacatta 348  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  27322754 taccacatttgactccttaaccagtgc-cggggcactggttaacatta 27322708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 9116405 - 9116485
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 311  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||| ||||||||||||    
T  9116405 aagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaatatttaccacatttg 9116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 16634494 - 16634421
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttacc 304  Q
    ||||||||||||| ||| |||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  16634494 aagttttaaaatagaagcaacattttttatgcttttgaaaagttgacagcacaaattccaatgtaatacttacc 16634421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 3037490 - 3037421
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 298  Q
    |||| ||||||||| ||||||||||||||||||||||| |  |||||||| |||||||| ||||||||||    
T  3037490 gaaaattttaaaatcaaagtaacactttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 19679486 - 19679448
Alignment:
Q  179 ggtgatgttaaccggtgccctaggggcactggttaagga 217  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  19679486 ggtgttgttaaccggtgcccttggggcactggttaagga 19679448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 203 - 354
Target Start/End: Original strand, 8936054 - 8936205
Alignment:
Q  203 ggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactta 302  Q
    |||||||||||||||||||       | |||||||||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||     
T  8936054 ggcactggttaaggaaacttaaaaaaggaagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcacaagtttcaatgtaatacttg 8936153  T
Q  303 ccacatttggctctttaaccagtgctcggggcactggttaacattatccttt 354  Q
    ||||||||  ||| ||||||||||| || ||||||||||||||||| |||||    
T  8936154 ccacatttaactccttaaccagtgcccgaggcactggttaacattacccttt 8936205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 43178677 - 43178597
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 311  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||  |||||||    
T  43178677 aagttttaaaataaaagtaacattttttatacttttcaaaagttgacagtacaaatttcaatgtaatatttattacatttg 43178597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 4395315 - 4395381
Alignment:
Q  352 tttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 418  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4395315 tttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaa 4395381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 42388815 - 42388719
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc 327  Q
    ||||||||| || ||| |||||||||||||  |||| |||||||||||||||||||| ||||  ||||||||| ||||||| ||  |||||||||||    
T  42388815 aagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcacaaattccaatacaatacttactacatttgacttcttaaccagtgc 42388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 36563180 - 36563038
Alignment:
Q  184 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 283  Q
    |||||||||||||||  |||||||||||||| ||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||| ||||    
T  36563180 tgttaaccggtgcccccggggcactggttaaagaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacatcaca 36563082  T
Q  284 aatttcaatgtaatacttaccacatttggctctttaaccagtgc 327  Q
    | || ||||  ||||||||| |||||||  || |||||||||||    
T  36563081 agttacaatacaatacttactacatttgtttcgttaaccagtgc 36563038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 1294908 - 1294988
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 311  Q
    |||||||||||| ||||||||| |||||||  || | || || |||||||||||||||||||||||||||||  |||||||    
T  1294908 aagttttaaaatgaaagtaacattttttatgtttatgaagagctgacagcacaaatttcaatgtaatacttattacatttg 1294988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 327
Target Start/End: Original strand, 36545134 - 36545276
Alignment:
Q  184 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 283  Q
    |||||||||||||||  |||||||||||||| ||||||       |||| ||||||| | ||| ||||||||||||| ||||| |  |||||||| ||||    
T  36545134 tgttaaccggtgcccccggggcactggttaaagaaactaaaaag-gaaaattttaaagtgaaaataacactttttatgcttttgaggagttgacatcaca 36545232  T
Q  284 aatttcaatgtaatacttaccacatttggctctttaaccagtgc 327  Q
    | || ||||  ||||||||| |||||||  || |||||||||||    
T  36545233 agttacaatacaatacttactacatttgtttcgttaaccagtgc 36545276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 4395256 - 4395323
Alignment:
Q  111 ggtgttgttg-tttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaat 177  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| || |||| ||||||    
T  4395256 ggtgttgttgctttgatttagaacaaatctcaagagttggatatggtctacacataaattttgcaaat 4395323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 9799198 - 9799375
Alignment:
Q  177 tgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 276  Q
    ||||| ||||||||| ||||||  | |||||||||||||||||||       |||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  9799198 tgggtcatgttaaccagtgcccccgtggcactggttaaggaaactaaaaattgaaagtcttaaaataaaggtaacactttttatacttttcaagagttga 9799297  T
Q  277 cagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg-ctcggggcactggttaacattatcctt 353  Q
    || ||||| || ||||||||||||||||||||||  ||| |||||||||| | | || ||||||||||||||| ||||    
T  9799298 caacacaagttccaatgtaatacttaccacatttaactccttaaccagtgcccctggacactggttaacattaccctt 9799375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 231 - 348
Target Start/End: Original strand, 40995823 - 40995942
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcg 330  Q
    |||||||||||| ||| |||||||||||||  |||| || |||||||| |||||||||||||||||||||||| |||||||  ||||||| || |||||     
T  40995823 aagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattctttaatcaatgctct 40995922  T
Q  331 gg--gcactggttaacatta 348  Q
    ||  ||||||||||||||||    
T  40995923 ggaagcactggttaacatta 40995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 7222846 - 7222913
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 298  Q
    |||| |||||||||||||||||||||||||||  |||| || |||  |||||||||||||||||||||||    
T  7222846 gaaaattttaaaataaaagtaacactttttatgtttttgaatagt--acagcacaaatttcaatgtaata 7222913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 30478540 - 30478408
Alignment:
Q  178 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 277  Q
    |||| ||||||||||||||||| ||||||| |||||||||| ||       ||||| |||||||| ||| ||| ||||||| | ||||| | || |||||    
T  30478540 gggtcatgttaaccggtgccctcggggcacgggttaaggaacctaaaaaaggaaag-tttaaaatgaaaataatactttttgtgcttttgagaaattgac 30478442  T
Q  278 agcacaaatttcaatgtaatacttaccacatttg 311  Q
    || |||| |||||| | ||||||||| |||||||    
T  30478441 agtacaagtttcaacgcaatacttactacatttg 30478408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 45397578 - 45397512
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactt 301  Q
    ||||||||||||| |||||||||| | |||||| | ||||||||| || |||||||||||||||||||    
T  45397578 ttttaaaataaaaataacacttttaa-actttttagaagttgacaacaaaaatttcaatgtaatactt 45397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 12000142 - 12000223
Alignment:
Q  230 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 311  Q
    ||||||||||| | ||| ||| | ||||||| ||||| | | |||||||||||||||| ||||| || |||||| |||||||    
T  12000142 aaagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcacaaattccaatgcaacacttactacatttg 12000223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 35467786 - 35467831
Alignment:
Q  308 tttggctctttaaccagtgctcggggcactggttaacattatcctt 353  Q
    |||| ||| ||||||||||| |||||||||||||||||||| ||||    
T  35467786 tttgactccttaaccagtgcccggggcactggttaacattaccctt 35467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 15111876 - 15111968
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 326  Q
    ||||||||| ||| |||||||||||||| |||| |  |||||||| ||||| ||| ||| ||| |||||| | |||||  || ||||||||||    
T  15111876 ttttaaaatgaaaataacactttttatattttttaggagttgacaacacaagttttaatataaaacttactagatttgattccttaaccagtg 15111968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 178 - 348
Target Start/End: Complemental strand, 6235 - 6063
Alignment:
Q  178 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 277  Q
    |||| |||||||||||||  | |||||||| |||||||||||||       |||||||||||||| |||||||||||||||||  |||| ||||||||||    
T  6235 gggttatgttaaccggtgttccaggggcaccggttaaggaaactaaaaaaagaaagttttaaaatgaaagtaacactttttatgtttttgaaaagttgac 6136  T
Q  278 agcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcggg--gcactggttaacatta 348  Q
    |||| ||||| ||||| ||||||||| ||||||| ||| ||||||||||| | ||  ||||||||||||||||    
T  6135 agcataaattccaatgcaatacttactacatttgactccttaaccagtgccccggaagcactggttaacatta 6063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 177 - 354
Target Start/End: Complemental strand, 19328950 - 19328775
Alignment:
Q  177 tgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 276  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||         |||||||||||| ||||||||||||||||||||||| || ||||||    
T  19328950 tgggtcatgttaaccggtgccccgggggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacactttttatacttttgaagagttga 19328851  T
Q  277 cagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc--tcggggcactggttaacattatccttt 354  Q
     ||||||| || ||||||||||||||||||||||| ||  ||||||| |||  ||    |||||||||||||||||||||    
T  19328850 tagcacaagttccaatgtaatacttaccacatttgacttcttaaccaatgccttc----cactggttaacattatccttt 19328775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 18050011 - 18049945
Alignment:
Q  352 tttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 418  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  18050011 tttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaa 18049945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 27756547 - 27756450
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 326  Q
    |||| ||||||||| ||| ||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| |||||||  || ||||||||||    
T  27756547 gaaacttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattccttaaccagtg 27756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 3913724 - 3913647
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 311  Q
    ||||||||| ||||||||||||||||||||||| || |||| ||| ||||| || ||| |||||||||||||||||||    
T  3913724 ttttaaaatgaaagtaacactttttatacttttgaagagttaacaacacaagttccaacgtaatacttaccacatttg 3913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 38510000 - 38509880
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgggg 333  Q
    ||||||||||||| |||||||||| |||||||| |  |||||||| ||||| || ||||| |||| |||  |||||||  || ||||| |||| || ||     
T  38510000 ttttaaaataaaaataacacttttcatacttttgaggagttgacaacacaagttccaatgcaatatttattacatttgattccttaacaagtgttccgga 38509901  T
Q  334 cactggttaacattatccttt 354  Q
    ||| ||||||||||| |||||    
T  38509900 caccggttaacattacccttt 38509880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 18050070 - 18050003
Alignment:
Q  111 ggtgttgttg-tttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaat 177  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| || |||| ||||||    
T  18050070 ggtgttgttgctttgatttagaacaaatctcaagagttggatatggtctacacataaattttgcaaat 18050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 4687363 - 4687425
Alignment:
Q  230 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaat 292  Q
    ||||||||||| ||||| ||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  4687363 aaagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcacaaattccaat 4687425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 3427938 - 3427861
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 311  Q
    ||||||||| ||| |||||||||||||  |||| || |||||||| ||||| |||||||  ||||||||| |||||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaagtttcaatacaatacttactacatttg 3427861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 25474657 - 25474715
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaat 292  Q
    ||||||||| ||| ||||| ||||||| ||||| || |||||||| |||||||||||||    
T  25474657 ttttaaaatgaaaataacattttttatgcttttgaagagttgacaacacaaatttcaat 25474715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 30486952 - 30487048
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc 327  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  30486952 aagttttaaaataaaagtaacattttttatattttttaaaagttgacggcacaaatttcaatgcaatacttacgacatttgactccttaaccagtgc 30487048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 37720509 - 37720635
Alignment:
Q  184 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 283  Q
    ||||||||| |||||   ||||||||||||||||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||||||||    
T  37720509 tgttaaccgatgcccccagggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcaca 37720607  T
Q  284 aatttcaatgtaatacttaccacatttg 311  Q
      || ||||| ||||||||| |||||||    
T  37720608 tgttccaatgcaatacttactacatttg 37720635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 28710390 - 28710485
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccag 324  Q
    |||||||||||| | ||| ||||| |||||||  |||| |  ||||  ||||||||||| ||||||||||||||| |||||||  || ||||||||    
T  28710390 gaaagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcacaaattccaatgtaatacttactacatttgattccttaaccag 28710485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 22891066 - 22891022
Alignment:
Q  374 catcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 418  Q
    ||||||||| |||||||||||||||| ||  ||||||||||||||    
T  22891066 catcaaaatcatgatttgtgaattgtgcagcagatgtagaaagaa 22891022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 40234707 - 40234663
Alignment:
Q  174 aaatgggtgatgttaaccggtgccctaggggcactggttaaggaa 218  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||    
T  40234707 aaatgggtcatgttaaccggtgctcccggggcactggttaaggaa 40234663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 28988361 - 28988512
Alignment:
Q  201 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttata--cttttcaaaagttgacagcacaaatttcaatgtaata 298  Q
    |||||||||||||||||||||       | || ||||||||| ||||||||||||||| ||  ||||| ||||||||||  |||||||||||||||||||    
T  28988361 ggggcactggttaaggaaactaaaaaaaggaaattttaaaatgaaagtaacactttttttatgcttttgaaaagttgacgacacaaatttcaatgtaata 28988460  T
Q  299 cttaccacatttggctctttaaccagtg--ctcggggcactggttaacatta 348  Q
     |||||||||||| ||| ||||||||||  |  ||| |||||||||||||||    
T  28988461 attaccacatttgactccttaaccagtggccctgggacactggttaacatta 28988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 21067739 - 21067574
Alignment:
Q  183 atgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcac 282  Q
    |||||||||| ||||   || ||||||||||||||||||       | |||||||||||| ||||||  ||||||||| ||||| || || ||||| |||    
T  21067739 atgttaaccgatgcctccggtgcactggttaaggaaactcaaaaaaggaagttttaaaatgaaagtactactttttatgcttttgaagagatgacaacac 21067640  T
Q  283 aaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgg-ggcactggttaacatt 347  Q
    || |||||||||||||||||| ||||||| ||| |||||||||   ||| ||||||||||||||||    
T  21067639 aagtttcaatgtaatacttactacatttgactccttaaccagtttccggaggcactggttaacatt 21067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 354
Target Start/End: Complemental strand, 24233277 - 24233126
Alignment:
Q  205 cactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttacc 304  Q
    |||||||||||||||||       | |||||| || || |||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||      
T  24233277 cactggttaaggaaactaaaaaaaggaagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttccaatgcaatacttatt 24233178  T
Q  305 acatttggctctttaaccagtgctc--ggggcactggttaacattatccttt 354  Q
    ||||||| ||| ||||| |||| ||  ||| ||||||||||||||| |||||    
T  24233177 acatttgactccttaactagtgttccggggacactggttaacattacccttt 24233126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 39753318 - 39753387
Alignment:
Q  231 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 300  Q
    |||||||||||| ||||||| ||||||||| ||||| || |||||||||||||| |||||||||||||||    
T  39753318 aagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcacaagtttcaatgtaatact 39753387  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 19187217 - 19187144
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactta 302  Q
    |||||||||||||| |||  |||||||||||| ||||| || |||||||| ||||||||||||||||| |||||    
T  19187217 gaaagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaaaactta 19187144  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 36603640 - 36603769
Alignment:
Q  174 aaatgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagt 273  Q
    |||||||| ||||||||| || |||  |||||||| ||||||||| ||       |||||||||||||| ||||| |||||||||||  |||| || |||    
T  36603640 aaatgggtcatgttaaccagtaccccgggggcactagttaaggaacctaaaaaaagaaagttttaaaatgaaagtgacactttttatgtttttgaagagt 36603739  T
Q  274 tgacagcacaaatttcaatgtaatacttac 303  Q
    ||||| ||||| || ||||| |||||||||    
T  36603740 tgacaacacaagttccaatgcaatacttac 36603769  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 14123006 - 14122887
Alignment:
Q  201 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 300  Q
    |||||||||||||||||||||       | |||||||||||| ||||||||||||| ||| ||||| || ||||||||   || ||| ||| ||||||||    
T  14123006 ggggcactggttaaggaaactaaaagaaggaagttttaaaatgaaagtaacactttatatgcttttgaatagttgaca-atcatattccaaggtaatact 14122908  T
Q  301 taccacatttggctctttaac 321  Q
    ||||||||||| ||| |||||    
T  14122907 taccacatttgactccttaac 14122887  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 1180025 - 1179953
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactt 301  Q
    |||| ||||||||||||| |||||||||||||  |||| | ||||||||| || || ||||||||||||||||    
T  1180025 gaaaattttaaaataaaaataacactttttatgttttttagaagttgacaacataagtttcaatgtaatactt 1179953  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 38282569 - 38282505
Alignment:
Q  234 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 298  Q
    ||||||||| ||| |||||||||||||| |||| || |||||||| ||||||||| |||||||||    
T  38282569 ttttaaaatgaaaataacactttttatatttttaaagagttgacaacacaaattttaatgtaata 38282505  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 39031741 - 39031661
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacattt 310  Q
    |||||||||||||| ||||||| | |||||||  |||| || | ||||||||| |||||| ||||||||| |||||||||||    
T  39031741 gaaagttttaaaatgaaagtaatattttttatg-ttttgaataattgacagcataaattttaatgtaatatttaccacattt 39031661  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 6677137 - 6677065
Alignment:
Q  254 tttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 326  Q
    ||||||| ||||| || |||||| | ||||||||||||| ||| |||||| |||||||  || ||||||||||    
T  6677137 tttttatgcttttgaagagttgagaacacaaatttcaatataaaacttactacatttgattccttaaccagtg 6677065  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 311
Target Start/End: Complemental strand, 1415 - 1280
Alignment:
Q  176 atgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttg 275  Q
    |||||| ||||||||||||||||  ||||||| || ||||||| ||       |||| ||||||||| ||| ||||| ||||||| ||||| |  |||||    
T  1415 atgggtcatgttaaccggtgcccctggggcacgggctaaggaacctaaaaaaagaaatttttaaaatgaaaataacattttttatgcttttgatgagttg 1316  T
Q  276 acagcacaaatttcaatgtaatacttaccacatttg 311  Q
    ||| ||||| |  ||||| ||||||||| |||||||    
T  1315 acaacacaagtaccaatgcaatacttactacatttg 1280  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 17170671 - 17170745
Alignment:
Q  229 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttac 303  Q
    |||| ||||||||||||| |||||||||||||| |||| |||| || ||| || |||||  ||||||| ||||||    
T  17170671 gaaaattttaaaataaaaataacactttttatatttttaaaaaattaacaacataaattctaatgtaaaacttac 17170745  T

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