View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_high_13 (Length: 338)
Name: NF20345_high_13
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_high_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 41846284 - 41845947
Alignment:
| Q |
1 |
tcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaaca |
100 |
Q |
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| T |
41846284 |
tcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaaca |
41846185 |
T |
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| Q |
101 |
atgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcaattcactttcaccttcacttg |
200 |
Q |
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| T |
41846184 |
atgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcgattcactttcaccttcacttg |
41846085 |
T |
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| Q |
201 |
ccacgactgaagattgcttagcttaatagcactagtgttattcattgctcgacgatggaatggaactgatctctttaatcctcttctaattgcatcgtta |
300 |
Q |
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| T |
41846084 |
ccacgactgaagattgcttagcttaatagcactagtgttattcattgctcaacgatggaatggaactgatctctttaatcctcttctaattgcatggtta |
41845985 |
T |
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| Q |
301 |
tttaaattgcatgagttgttatttattgttttctattt |
338 |
Q |
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| T |
41845984 |
tttaaattgcatgagttgttatttattgttttctattt |
41845947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26890714 - 26890927
Alignment:
| Q |
1 |
tcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaaca |
100 |
Q |
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|||||||||| || | ||||||||||||||||| |||||||| ||||||||| ||||||| | |||||||| | | || || ||||| |||||||| |
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| T |
26890714 |
tcaagaacttctgcgatacaagaacattgaggaagagcttgtgtcaatgctgcatgttgggttggcttgtgtggtgcagcagccagagaagaggccaact |
26890813 |
T |
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| Q |
101 |
atgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcaattcactttcaccttcacttg |
200 |
Q |
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||| | ||||||||||| ||||| |||||||| || ||||| ||||||||||| | ||||| ||||| ||||| |||||||| ||||||||||| || |
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| T |
26890814 |
atggtagatgttgttaaaatgattgaggatatcagagtggagcaatctcctctgtgtgaggactatgacgaatcacgcaattcgctttcaccttccattc |
26890913 |
T |
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| Q |
201 |
ccacgactgaagat |
214 |
Q |
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|||| ||||||||| |
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| T |
26890914 |
ccaccactgaagat |
26890927 |
T |
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