View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20345_high_21 (Length: 253)

Name: NF20345_high_21
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20345_high_21
NF20345_high_21
[»] chr1 (2 HSPs)
chr1 (12-217)||(48505834-48506039)
chr1 (137-237)||(48505751-48505851)
[»] chr2 (4 HSPs)
chr2 (12-106)||(40927824-40927918)
chr2 (127-206)||(40927916-40927995)
chr2 (120-181)||(27409391-27409452)
chr2 (208-237)||(40927985-40928014)
[»] chr4 (2 HSPs)
chr4 (43-181)||(52628886-52629023)
chr4 (120-181)||(31979284-31979345)
[»] chr6 (1 HSPs)
chr6 (43-169)||(32090645-32090770)
[»] chr3 (1 HSPs)
chr3 (43-158)||(35091823-35091930)
[»] chr5 (1 HSPs)
chr5 (114-177)||(7649834-7649897)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 48506039 - 48505834
Alignment:
Q  12 aaagggctcgtgttcattcttgagggatctgttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48506039 aaagggctcgtgttcattcttgagggatctgttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaa 48505940  T
Q  112 gaaaattgacatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgttagcagcttgtattttccctaattgaaaccct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  48505939 gaaaattgacatgcaatagaatgagaattgaaaccctaattgattttcccattttgtttttgtgttgttagcaggttgtattttccttaattgaaaccct 48505840  T
Q  212 aattga 217  Q
    ||||||    
T  48505839 aattga 48505834  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 48505851 - 48505751
Alignment:
Q  137 aattgaaaccctaattgattttccctttttgtttttgtgttgttagcagcttgtattttccctaattgaaaccctaattgaatgcaatagaatgtgagat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48505851 aattgaaaccctaattgattttccctttttgtttttgtgttgttagcaggttgtatttttcctaattgaaaccctaattgaatgcaatagaatgtgagat 48505752  T
Q  237 t 237  Q
    |    
T  48505751 t 48505751  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 40927824 - 40927918
Alignment:
Q  12 aaagggctcgtgttcattcttgagggatctgttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattata 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40927824 aaagggctcgtgttcattcttgagggatcttttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattata 40927918  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 40927916 - 40927995
Alignment:
Q  127 atagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgttagcagcttgtattttccctaattgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  40927916 atagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgttagcagtttttattttccctaattgaa 40927995  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 27409452 - 27409391
Alignment:
Q  120 acatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgtta 181  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||    
T  27409452 acatgcaatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta 27409391  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 40927985 - 40928014
Alignment:
Q  208 ccctaattgaatgcaatagaatgtgagatt 237  Q
    ||||||||||||||||||||||||||||||    
T  40927985 ccctaattgaatgcaatagaatgtgagatt 40928014  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 52628886 - 52629023
Alignment:
Q  43 ttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaagaaaattgacatgcaatagaatgagaattga 142  Q
    ||||||||| |||||||||||||||| |||||  |||||||||| | ||| ||| |||||||   ||| | ||||||||||||||| ||||||| |||||    
T  52628886 ttgaggtgaatttcttaaattaggttctaattatagcaaaaggggactggcattggcaattagggttagggaaattgacatgcaat-gaatgaggattga 52628984  T
Q  143 aaccctaattgattttccctttttgtttttgtgttgtta 181  Q
    || |||| ||||||||||||||||||| |||||||||||    
T  52628985 aaacctagttgattttccctttttgttattgtgttgtta 52629023  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 31979284 - 31979345
Alignment:
Q  120 acatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgtta 181  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||    
T  31979284 acatgcaatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta 31979345  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 32090645 - 32090770
Alignment:
Q  43 ttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaagaaaattgacatgcaatagaatgagaattga 142  Q
    ||||||||| ||||| |||||||||| |||||  |||||||||||| | ||||| |||||||  || ||| |||||||||||||||||||  | ||||||    
T  32090645 ttgaggtgattttctcaaattaggttctaattatagcaaaagggaacttgaatttgcaattaggat-aaggaaattgacatgcaatagaacaaaaattga 32090743  T
Q  143 aaccctaattgattttccctttttgtt 169  Q
    |||||||| ||||||||||||||||||    
T  32090744 aaccctaactgattttccctttttgtt 32090770  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 35091930 - 35091823
Alignment:
Q  43 ttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaagaaaattgacatgcaatagaatgagaattga 142  Q
    ||||||||||||||| |||||||||| |||||  |  ||||||||| ||||||||||||||| ||        ||||||||||||||||||||||| |||    
T  35091930 ttgaggtgagtttctcaaattaggttctaattataataaaagggaactggaattagcaattagaa--------attgacatgcaatagaatgagaactga 35091839  T
Q  143 aaccctaattgatttt 158  Q
    ||||||||||||||||    
T  35091838 aaccctaattgatttt 35091823  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 7649897 - 7649834
Alignment:
Q  114 aaattgacatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgtt 177  Q
    |||||| ||||||||||||||| |||||||||||  ||||||||| |||||||||| |||||||    
T  7649897 aaattggcatgcaatagaatgataattgaaaccccgattgatttttcctttttgttgttgtgtt 7649834  T

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