View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20345_high_27 (Length: 225)

Name: NF20345_high_27
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20345_high_27
NF20345_high_27
[»] chr2 (16 HSPs)
chr2 (18-210)||(39228804-39228996)
chr2 (104-196)||(12419503-12419595)
chr2 (104-196)||(12431563-12431655)
chr2 (65-201)||(14695068-14695203)
chr2 (84-158)||(36254555-36254629)
chr2 (71-162)||(20105303-20105400)
chr2 (99-162)||(5136174-5136237)
chr2 (113-162)||(9848110-9848159)
chr2 (118-159)||(38002026-38002067)
chr2 (82-162)||(4730664-4730749)
chr2 (115-162)||(18482109-18482156)
chr2 (82-162)||(463778-463858)
chr2 (99-162)||(35114575-35114638)
chr2 (132-166)||(27185804-27185838)
chr2 (132-166)||(27835346-27835380)
chr2 (117-165)||(4724348-4724396)
[»] chr1 (18 HSPs)
chr1 (76-210)||(48563218-48563352)
chr1 (66-159)||(16256427-16256520)
chr1 (101-159)||(15394629-15394687)
chr1 (71-202)||(52148776-52148911)
chr1 (82-162)||(50959523-50959606)
chr1 (73-160)||(18650445-18650532)
chr1 (106-162)||(18628967-18629023)
chr1 (102-162)||(33323885-33323945)
chr1 (99-162)||(8326998-8327061)
chr1 (65-152)||(19757709-19757796)
chr1 (68-159)||(27901223-27901314)
chr1 (71-162)||(26762223-26762312)
chr1 (106-162)||(26925118-26925174)
chr1 (115-160)||(2688447-2688492)
chr1 (73-162)||(23777001-23777090)
chr1 (105-158)||(26759363-26759416)
chr1 (86-166)||(25023482-25023562)
chr1 (99-162)||(16219108-16219171)
[»] chr8 (8 HSPs)
chr8 (76-171)||(41566145-41566240)
chr8 (84-210)||(1029688-1029813)
chr8 (83-171)||(11954587-11954675)
chr8 (84-162)||(14442609-14442687)
chr8 (71-162)||(10659195-10659286)
chr8 (113-162)||(14575370-14575419)
chr8 (140-203)||(38731816-38731879)
chr8 (83-162)||(41940096-41940175)
[»] chr7 (11 HSPs)
chr7 (71-210)||(27900289-27900430)
chr7 (60-210)||(10623298-10623443)
chr7 (71-210)||(28002600-28002740)
chr7 (75-210)||(16994441-16994576)
chr7 (71-162)||(10019749-10019842)
chr7 (71-159)||(20118263-20118349)
chr7 (115-160)||(28302155-28302200)
chr7 (124-162)||(46611516-46611554)
chr7 (66-162)||(2620535-2620631)
chr7 (115-162)||(10003852-10003899)
chr7 (118-162)||(5907018-5907062)
[»] chr4 (16 HSPs)
chr4 (84-188)||(38011634-38011738)
chr4 (99-190)||(1745422-1745512)
chr4 (71-162)||(44136769-44136860)
chr4 (76-171)||(2815079-2815174)
chr4 (67-158)||(18402887-18402977)
chr4 (65-210)||(20649948-20650091)
chr4 (76-171)||(35260228-35260323)
chr4 (83-160)||(25100351-25100428)
chr4 (76-162)||(30257392-30257481)
chr4 (99-162)||(41839740-41839803)
chr4 (100-162)||(44311841-44311903)
chr4 (77-162)||(53813910-53813995)
chr4 (115-203)||(21481114-21481202)
chr4 (106-162)||(44206999-44207055)
chr4 (65-162)||(5383686-5383783)
chr4 (132-208)||(29847884-29847960)
[»] scaffold0003 (1 HSPs)
scaffold0003 (77-162)||(353236-353321)
[»] chr6 (7 HSPs)
chr6 (97-166)||(3008837-3008906)
chr6 (66-162)||(8209964-8210060)
chr6 (120-190)||(6257236-6257305)
chr6 (82-158)||(31303999-31304075)
chr6 (99-158)||(29032685-29032744)
chr6 (65-203)||(6189604-6189742)
chr6 (71-198)||(20066334-20066462)
[»] chr3 (12 HSPs)
chr3 (71-173)||(7903430-7903532)
chr3 (71-157)||(35740188-35740274)
chr3 (98-162)||(47005839-47005903)
chr3 (97-190)||(24405024-24405116)
chr3 (71-175)||(3153874-3153978)
chr3 (77-162)||(51663954-51664039)
chr3 (105-159)||(23085171-23085225)
chr3 (124-162)||(28421122-28421160)
chr3 (82-146)||(43335454-43335521)
chr3 (99-162)||(17768086-17768150)
chr3 (99-162)||(19069387-19069451)
chr3 (122-162)||(42867427-42867467)
[»] chr5 (5 HSPs)
chr5 (76-162)||(24099391-24099480)
chr5 (104-194)||(18274018-18274108)
chr5 (93-159)||(43168753-43168819)
chr5 (99-162)||(12566897-12566960)
chr5 (76-148)||(17589880-17589953)
[»] scaffold0174 (1 HSPs)
scaffold0174 (115-162)||(30582-30629)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 39228804 - 39228996
Alignment:
Q  18 attgctctttttatcgaaaattaggcggctttagacttgtaccgtgcttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctgg 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  39228804 attgctctttttatcgaaaattaggtggctttagacttgtaccgtgcttgtggttcaaaaacctgaaaggctatggttctgttaacccgaaaggttctgg 39228903  T
Q  118 ttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggtttgacttcttcgaatctctg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39228904 ttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaaactgcttgtgtttggtggtttgacttcttcgaatctctg 39228996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 12419595 - 12419503
Alignment:
Q  104 ccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggtttgact 196  Q
    |||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||   ||||||||||||| ||||||    
T  12419595 ccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgact 12419503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 12431655 - 12431563
Alignment:
Q  104 ccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggtttgact 196  Q
    |||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||   ||||||||||||| ||||||    
T  12431655 ccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgact 12431563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 14695203 - 14695068
Alignment:
Q  65 ttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtat 164  Q
    |||||| |||||||||  ||||||| | ||||||||||| ||||||| ||| |||||||||||||| |||| ||| |||||||| |||||||||| ||||    
T  14695203 ttgtgactcaaaaaccc-aaagggtctcgttctgttaactcgaaagggtctagttactaacgtattggacttatcactcgatctaagttcttacgagtat 14695105  T
Q  165 gtctgaaactgcttgtgtttggtggtttgacttcttc 201  Q
    || ||||||   || ||||||||||  ||||||||||    
T  14695104 gtatgaaacatgttctgtttggtggcctgacttcttc 14695068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 36254555 - 36254629
Alignment:
Q  84 aagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttac 158  Q
    |||||| ||||||| | ||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||    
T  36254555 aagggtctggttctataaacccgaaaggttctggtttctatcgtattggactcatccctcgatctgagttcttac 36254629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 20105303 - 20105400
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctg----gttact--aacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||| |||||||| | ||||||||||||||||||| ||||    ||||||  |||||||| |||||||| ||||||||||||||||||||||    
T  20105303 ttcaaaaacccgaaagggtctagttctgttaacccgaaagggtctgattggttactttaacgtattggactcatcactcgatctgagttcttacgcgt 20105400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 5136174 - 5136237
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||||||| | ||| || ||||||||| |||||||||||||||||||||||||||||||    
T  5136174 ttaacccgaaagggtttggctattaacgtattggactcatccctcgatctgagttcttacgcgt 5136237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 9848110 - 9848159
Alignment:
Q  113 tctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9848110 tctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 38002026 - 38002067
Alignment:
Q  118 ttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  38002026 ttactaacgtattggactcatccctcgatctgagttcttacg 38002067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 4730664 - 4730749
Alignment:
Q  82 gaaagggtatggttctgttaa-cccgaaaggatctg----gttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||  ||||||||||| ||||||||| ||||    |||||||||||||| |||||||||| ||||||||||||| ||||||    
T  4730664 gaaagggttcggttctgttaaacccgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagttctaacgcgt 4730749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 18482156 - 18482109
Alignment:
Q  115 tggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||    
T  18482156 tggttattaacatattggactcatccctcgatctgagttcttacgcgt 18482109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 463778 - 463858
Alignment:
Q  82 gaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||| ||||||   ||||||||||||||||| || || |||||||  ||||||||| ||||||||||| | ||||||    
T  463778 gaaagggtctggttcgtataacccgaaaggatctgatttctgacgtattgaactcatcccccgatctgagttttaacgcgt 463858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 35114638 - 35114575
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||| |||||||| | ||||||| ||||||||||| |||| ||| ||||||||||    
T  35114638 ttaacccaaaagggtctggttattgacgtattagactcatcccttgatccgagctcttacgcgt 35114575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 27185804 - 27185838
Alignment:
Q  132 gactcatccctcgatctgagttcttacgcgtatgt 166  Q
    ||||||||||||||||||||||| |||||||||||    
T  27185804 gactcatccctcgatctgagttcatacgcgtatgt 27185838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 27835346 - 27835380
Alignment:
Q  132 gactcatccctcgatctgagttcttacgcgtatgt 166  Q
    ||||||||||||||||||||||| |||||||||||    
T  27835346 gactcatccctcgatctgagttcatacgcgtatgt 27835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 4724348 - 4724396
Alignment:
Q  117 gttactaacgtattcgactcatccctcgatctgagttcttacgcgtatg 165  Q
    |||||||||||||| || |||||||| |||||| ||||||||| |||||    
T  4724348 gttactaacgtattggaatcatcccttgatctgggttcttacgtgtatg 4724396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 48563218 - 48563352
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactg 175  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| |||| ||     
T  48563218 aaacctgaaagggtatggttctattaacctgaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatcta 48563317  T
Q  176 cttgtgtttggtggtttgacttcttcgaatctctg 210  Q
     ||||||||||| | |||||| ||| || ||||||    
T  48563318 gttgtgtttggttgcttgactactttgactctctg 48563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 16256427 - 16256520
Alignment:
Q  66 tgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    ||||||| ||||||| | |||||| ||||||| ||||||||||||| |||| || || ||||||| ||||||||||||||||||||||||||||    
T  16256427 tgtgattaaaaaacccgtaagggtctggttcttttaacccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacg 16256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 15394629 - 15394687
Alignment:
Q  101 aacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  15394629 aacccgaaaggatctggttactaatgtattggacgcatccctcgatctgagttcttacg 15394687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 52148776 - 52148911
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggat----ctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgt 166  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |    ||  ||| ||||||||| || || |||||||||||||||||||| ||||||||    
T  52148776 ttcaaaaacctaaaagggtatggttatgttaacccgaaagggttgcgctaattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgt 52148875  T
Q  167 ctgaaactgcttgtgtttggtggtttgacttcttcg 202  Q
     ||||  |  |||||||||||||  ||||| |||||    
T  52148876 ttgaacgtcattgtgtttggtggcctgactgcttcg 52148911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 50959606 - 50959523
Alignment:
Q  82 gaaagggtatggttctgtt---aacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||||||||||  |   |||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  50959606 gaaagggtatggttcttctaaaaaccagaaagggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 18650532 - 18650445
Alignment:
Q  73 caaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgc 160  Q
    |||||||| |||||||| ||||||  |||||||| |||| | |||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  18650532 caaaaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagttcttacgc 18650445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 18629023 - 18628967
Alignment:
Q  106 gaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  18629023 gaaagggtctggttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 33323885 - 33323945
Alignment:
Q  102 acccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||| | |||||| | ||||||| |||||||||||||||||||||||||||||||    
T  33323885 acccgaaagggtatggttaatgacgtattggactcatccctcgatctgagttcttacgcgt 33323945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 8327061 - 8326998
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||||||| ||||||| || |||||||  ||||||||||||||||||||| ||||||||    
T  8327061 ttaacccgaaagggtctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 8326998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 19757709 - 19757796
Alignment:
Q  65 ttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagt 152  Q
    |||||||||| ||||  |||||||| |||||   ||||||||||||| ||| ||| |||||||||| |||||||||| ||||||||||    
T  19757709 ttgtgattcataaactcgaaagggtttggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 27901314 - 27901223
Alignment:
Q  68 tgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    |||||||||||   | |||||| ||||||| ||||||||||||| |||| || ||||  |||| |||||||||||||||| |||||||||||    
T  27901314 tgattcaaaaattcgtaagggtctggttcttttaacccgaaagggtctgtttgctaatatattggactcatccctcgatcagagttcttacg 27901223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 26762223 - 26762312
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||| ||||| | |||||| ||||||  ||||||||||||| ||||||||||||||||||  ||||  |||||||||||| || ||||||||    
T  26762223 ttcataaacccgtaagggtctggttcgtttaacccgaaagggtctggttactaacgtattgaactc--ccctcgatctgactttttacgcgt 26762312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 26925174 - 26925118
Alignment:
Q  106 gaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| | |||||||| | ||||| |||||||||||||||||||||||||||||||    
T  26925174 gaaagggtatggttactgatgtattggactcatccctcgatctgagttcttacgcgt 26925118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 2688492 - 2688447
Alignment:
Q  115 tggttactaacgtattcgactcatccctcgatctgagttcttacgc 160  Q
    |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  2688492 tggttactaacgtattggactcatcccacgatctgagttctaacgc 2688447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 23777001 - 23777090
Alignment:
Q  73 caaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| |||| ||||| | ||||  ||||||||||||  | |||| ||| | ||||| ||||||||||||||||||||||| |||||||    
T  23777001 caaaaatctgagagggtctagttcgcttaacccgaaagtgtttggtcactgatgtattggactcatccctcgatctgagttcctacgcgt 23777090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 26759363 - 26759416
Alignment:
Q  105 cgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttac 158  Q
    ||||||| | |||||||| ||||||| ||||||||||||||||| |||||||||    
T  26759363 cgaaagggtatggttactgacgtattggactcatccctcgatctaagttcttac 26759416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 25023562 - 25023482
Alignment:
Q  86 gggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgt 166  Q
    |||| ||||| |||||||  |||||| | |||||||| ||||||| || ||||||||| || |||||| ||||||||||||    
T  25023562 gggtttggttttgttaactagaaagggtttggttactgacgtattggattcatccctcaatttgagtttttacgcgtatgt 25023482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 16219108 - 16219171
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||| ||||  || ||||||||| ||||||||| | |||||||||||||||||||    
T  16219108 ttaacccaaaagggtctgactagtaacgtattagactcatcctttgatctgagttcttacgcgt 16219171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 41566145 - 41566240
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaa 171  Q
    ||||| ||||||||||||||||||||||||  |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  41566145 aaacccgaaagggtatggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaa 41566240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 1029813 - 1029688
Alignment:
Q  84 aagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtt 183  Q
    |||||| ||||||| ||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |   |||||||    
T  1029813 aagggtctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgtt 1029715  T
Q  184 tggtggtttgacttcttcgaatctctg 210  Q
    |||  | |||||| |||||| ||||||    
T  1029714 tggctgcttgactgcttcgactctctg 1029688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 11954675 - 11954587
Alignment:
Q  83 aaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaa 171  Q
    ||||||| || ||| |||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||| ||||    
T  11954675 aaagggtgtgattccgttaacccgaaagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaa 11954587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 14442687 - 14442609
Alignment:
Q  84 aagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| ||||||| | || |||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  14442687 aagggtctggttctataaatccgaaatgatctggtttctatcgtattagactcatccctcgatctgagttcttacgcgt 14442609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 10659286 - 10659195
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||| |||| |||||| | ||||||  |||||| |||||  ||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  10659286 ttcaataacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctcgatctgagttcttacgcgt 10659195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 14575419 - 14575370
Alignment:
Q  113 tctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||    
T  14575419 tctggttactgacgtattagactcatccctcgatctgattttttacgcgt 14575370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 38731816 - 38731879
Alignment:
Q  140 cctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggtttgacttcttcga 203  Q
    ||||||| ||||||||||||||| ||| ||||||   |||||||||||||  ||||||||||||    
T  38731816 cctcgatgtgagttcttacgcgtttgtttgaaaccaattgtgtttggtggcatgacttcttcga 38731879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 41940175 - 41940096
Alignment:
Q  83 aaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||||  ||||||||| ||| | |||||  | |||||||  ||||||||||||||||||||| ||||||||    
T  41940175 aaagggtctggttcgtttaacccgatagggtatggtttttgacgtattgaactcatccctcgatctgagtttttacgcgt 41940096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 27900430 - 27900289
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaa--cccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtct 168  Q
    |||||||||| ||||||||||| || ||||||  ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| |    
T  27900430 ttcaaaaacccgaaagggtatgtttatgttaaaacccgaaagggtctggttactaacatattggactcatccctcgatctgagttcttacacgtatgttt 27900331  T
Q  169 gaaa-ctgcttgtgtttggtggtttgacttcttcgaatctctg 210  Q
    |||| |||| ||||||||||||  ||||| |||||| ||||||    
T  27900330 gaaacctgc-tgtgtttggtggcctgactacttcgactctctg 27900289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 10623298 - 10623443
Alignment:
Q  60 cgtgcttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    |||| |||||| ||||||||| |||| ||| ||||||| ||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||| |||    
T  10623298 cgtgtttgtgactcaaaaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtattggactcatccctcgatctgagttctaacg 10623397  T
Q  160 cgtatgtctgaaactgcttgtgtttggtggtttgacttcttcgaatctctg 210  Q
    | | ||| ||||     |||||||||||||| | ||||||| || ||||||    
T  10623398 catttgtttgaa-----ttgtgtttggtggtctaacttctttgactctctg 10623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 28002600 - 28002740
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg-cgtatgtctg 169  Q
    ||||||||||||||||||||||  |||| ||| | |||||| |||||||| |||||||||  |||||||||||||||||||||||||||  || ||| ||    
T  28002600 ttcaaaaacctgaaagggtatgactctgctaatctgaaagggtctggttattaacgtattgaactcatccctcgatctgagttcttacgatgtctgtttg 28002699  T
Q  170 aaactgcttgtgtttggtggtttgacttcttcgaatctctg 210  Q
    || ||  |||||||||||||  ||||| |||||| ||||||    
T  28002700 aatctcgttgtgtttggtggcctgactacttcgactctctg 28002740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 16994441 - 16994576
Alignment:
Q  75 aaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaact 174  Q
    ||||| |||||||||||| || ||||||||||||||| |||| ||||||   |||| ||||| ||||| |||||||||||||||| |||||| |||| ||    
T  16994441 aaaacttgaaagggtatgattttgttaacccgaaagggtctgattactagtttattggactcgtcccttgatctgagttcttacgtgtatgtttgaatct 16994540  T
Q  175 gcttgtgtttggtggtttgacttcttcgaatctctg 210  Q
      |||||||||||||  ||||| |||| | ||||||    
T  16994541 tgttgtgtttggtggcctgactgcttcaattctctg 16994576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 10019842 - 10019749
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatc--tggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||| | |||||||| | ||||| ||||||| ||||| ||  |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10019842 ttcaaaaatccgaaagggtctagttctattaacccaaaagggtccgtggttactaacgtattggactcatccctcgatttgagttcttacgcgt 10019749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 20118349 - 20118263
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    ||||| |||| |||||||| ||||||  ||||||||||||| |  |||| || ||||||| ||||||||||||||| ||||||||||||    
T  20118349 ttcaataacccgaaagggtctggttcgtttaacccgaaagggt--ggttgctgacgtattggactcatccctcgatatgagttcttacg 20118263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 28302200 - 28302155
Alignment:
Q  115 tggttactaacgtattcgactcatccctcgatctgagttcttacgc 160  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||    
T  28302200 tggttactaacgtattggactcatccctcgatctgtgttcttacgc 28302155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 46611554 - 46611516
Alignment:
Q  124 acgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  46611554 acgtattggactcatccctcgatctgagttcttacgcgt 46611516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 2620535 - 2620631
Alignment:
Q  66 tgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||| | | ||||||  |||||  |||||| |||||| |||| || || ||||||| || ||||| ||||||||||||||||||||||    
T  2620535 tgtgattaaaaaatccgtaagggtccggttcgtttaacctgaaaggttctgattgctgacgtatttgattcatctctcgatctgagttcttacgcgt 2620631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 10003899 - 10003852
Alignment:
Q  115 tggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||| | |||| |||||||||||||||| |||||||||||||    
T  10003899 tggttactaaagcattcaactcatccctcgatctaagttcttacgcgt 10003852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 5907018 - 5907062
Alignment:
Q  118 ttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||||||| ||||||||||||||| |||| ||||| ||||    
T  5907018 ttactaacgtattggactcatccctcgatatgagatcttatgcgt 5907062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 38011738 - 38011634
Alignment:
Q  84 aagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtt 183  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||| || |||| ||| |||||||    
T  38011738 aagggtatggttctgataacccgcaagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaagctggttgtgtt 38011639  T
Q  184 tggtg 188  Q
    |||||    
T  38011638 tggtg 38011634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 1745422 - 1745512
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggt 190  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| | |  ||||||| ||||||||||||||    
T  1745422 ttaacccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgtctcttggaaactg-ttgtgtttggtggt 1745512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 44136769 - 44136860
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||| |||| |||||||| ||||  ||| ||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  44136769 ttcaataacccgaaagggtctggtcatgtcaacccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 2815174 - 2815079
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaa 171  Q
    ||||| || ||||||||||| ||||||| || |||| |||||||||||| ||||| |||||||||  |||| ||||||||||||||||||| ||||    
T  2815174 aaacccgagagggtatggttatgttaactcggaagggtctggttactaatgtattggactcatcctacgatatgagttcttacgcgtatgtttgaa 2815079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 18402977 - 18402887
Alignment:
Q  67 gtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttac 158  Q
    |||| ||||||||| |||||||| |||||||   ||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||    
T  18402977 gtgactcaaaaacccgaaagggtctggttctac-aacccgaaagggtctggttactaacgtattgaactcatccatcgatctgagttcttac 18402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 20649948 - 20650091
Alignment:
Q  65 ttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtat 164  Q
    ||||| |||||||||| ||||||||||||||    ||||| |||||| | |||||| |||||||||  ||||||||||| |||||||||||||||| | |    
T  20649948 ttgtgtttcaaaaacccgaaagggtatggttaa--taacctgaaagggtttggttattaacgtattgaactcatccctcaatctgagttcttacgcatct 20650045  T
Q  165 gtctgaaactgcttgtgtttggtggtttgacttcttcgaatctctg 210  Q
    || |||||||  | |||||||||| | |  ||||||||| ||||||    
T  20650046 gtttgaaacttgtggtgtttggtgatgttgcttcttcgactctctg 20650091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 35260323 - 35260228
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaa 171  Q
    ||||||||| ||||||||||||||||||| |||||| | ||  ||||||| |||| || |||||| ||||| |||||||||| |||||||| ||||    
T  35260323 aaacctgaaggggtatggttctgttaacctgaaagggtttgaatactaacatattggattcatccatcgatttgagttcttatgcgtatgtttgaa 35260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 25100351 - 25100428
Alignment:
Q  83 aaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgc 160  Q
    ||||||| ||||||  ||||||||||||| ||||||| || |||||||  ||||||||||||||||||||| ||||||    
T  25100351 aaagggtctggttcaattaacccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacgc 25100428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 30257392 - 30257481
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatctg---gttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||| ||||||||| | |||||| |||||| ||||   |||| |||||||||  ||||||||||||||||||||| ||||||||    
T  30257392 aaacctgaaaaggtatggttttattaacctgaaagggtctgtaggttattaacgtattgaactcatccctcgatctgagtttttacgcgt 30257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 41839803 - 41839740
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| |||||| ||| |||||| ||||||| |||||||||||||||||||||||||| ||||    
T  41839803 ttaacctgaaagggtcttgttactgacgtattggactcatccctcgatctgagttcttatgcgt 41839740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 44311903 - 44311841
Alignment:
Q  100 taacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||| ||||||| | |||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  44311903 taactcgaaaggttatggttactaatgtattagactcatcactcgatctgagttcttacgcgt 44311841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 53813995 - 53813910
Alignment:
Q  77 aacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||| |||||||| ||||||  | ||||| ||| ||||||||| || | |||||  ||||||||||||||||||||| ||||||||    
T  53813995 aacccgaaagggtctggttcgataaacccaaaaagatctggtttctgatgtattgaactcatccctcgatctgagtttttacgcgt 53813910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 21481202 - 21481114
Alignment:
Q  115 tggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggtttgacttcttcga 203  Q
    |||||||| ||| ||| |||||||||||||| ||| ||||||| |||||||  ||||||   ||||| |||||||| |||| |||||||    
T  21481202 tggttactcacgaattggactcatccctcgacctgggttcttatgcgtatgattgaaacatgttgtggttggtggtatgacctcttcga 21481114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 44207055 - 44206999
Alignment:
Q  106 gaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| |||||||  | ||||||| ||||||||| |||||||||||||||||||||    
T  44207055 gaaagggtctggttgttgacgtattggactcatccatcgatctgagttcttacgcgt 44206999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 5383686 - 5383783
Alignment:
Q  65 ttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||| |||||| | | |||| ||||||  |||| |||||||| ||||||   | ||||||| ||||||||||||||| | ||||||| |||||    
T  5383686 ttgtgattctaaaacccggaggggtctggttcgtttaatccgaaagggtctggtagttgacgtattggactcatccctcgatttaagttcttgcgcgt 5383783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 29847960 - 29847884
Alignment:
Q  132 gactcatccctcgatctgagttcttacgcgtatg-tctgaaactgcttgtgtttggtggtttgacttcttcgaatctc 208  Q
    |||||||||||||||||||||| |||||||| || | |||||| | | ||||||||||| ||||| ||||||| ||||    
T  29847960 gactcatccctcgatctgagtttttacgcgtctgctttgaaaccg-tagtgtttggtggattgacctcttcgattctc 29847884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 353321 - 353236
Alignment:
Q  77 aacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||| |||||||| |||| |||||||| ||||||| |||||||||| || |||| |||||||||||||||||||||||||||||||    
T  353321 aacccgaaagggtctggtcctgttaactcgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 3008906 - 3008837
Alignment:
Q  97 tgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgt 166  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  3008906 tgttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgt 3008837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 8209964 - 8210060
Alignment:
Q  66 tgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| |||||||   |||||| |||||||  ||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8209964 tgtgatttaaaaacccacaagggtctggttcttctaacccggaaggttctggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 6257236 - 6257305
Alignment:
Q  120 actaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggt 190  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  6257236 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaactg-ttgtgtttggtggt 6257305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 31303999 - 31304075
Alignment:
Q  82 gaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttac 158  Q
    ||||| || ||||||  ||||||||||||| |||||||||| |||||||  ||||||||||||||||||||||||||    
T  31303999 gaaagagtttggttcgattaacccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 29032685 - 29032744
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttac 158  Q
    ||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  29032685 ttaacccaaaatggtctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 6189604 - 6189742
Alignment:
Q  65 ttgtgattcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtat 164  Q
    |||||||| ||||||| |||||||| |  |||| |||||  | ||||  ||||||||||| ||||| ||||||||||||||||| | |||||| || | |    
T  6189604 ttgtgattaaaaaacccgaaagggtctctttctattaacatgtaagggcctggttactaatgtattggactcatccctcgatctaaattcttaggcatct 6189703  T
Q  165 gtctgaaactgcttgtgtttggtggtttgacttcttcga 203  Q
    || |||||||  |||||||||| |  |||||||||||||    
T  6189704 gtttgaaactttttgtgtttggagacttgacttcttcga 6189742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 20066334 - 20066462
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaaccc-gaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctg 169  Q
    |||||||| | |||||||| ||||||||| || || | |||  |||||||||||||||||   || |||| ||||||| ||||||||| |||| | ||||    
T  20066334 ttcaaaaaaccgaaagggtctggttctgtcaaacctgtaagagtctggttactaacgtatcgtacacatctctcgatccgagttcttatgcgtctatctg 20066433  T
Q  170 aaactgcttgtgtttggtggtttgacttc 198  Q
    |||| |   ||||||||||| | ||||||    
T  20066434 aaaccggcagtgtttggtggctggacttc 20066462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 7903430 - 7903532
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctga 170  Q
    ||||||||| ||||| | ||||||||||||||||||||||| | || ||||||||||||| |  |||| ||||||| ||||||||||||| ||||| |||    
T  7903430 ttcaaaaacttgaaaagatatggttctgttaacccgaaagggtttgattactaacgtattggggtcattcctcgatttgagttcttacgcatatgtttga 7903529  T
Q  171 aac 173  Q
    |||    
T  7903530 aac 7903532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 35740274 - 35740188
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttctta 157  Q
    |||||||||| ||||||| |||||||||||| ||||||||| ||| | || ||||||||| ||||| ||||||||||||||||||||    
T  35740274 ttcaaaaacccgaaagggaatggttctgttagcccgaaagggtctagctattaacgtattggactcgtccctcgatctgagttctta 35740188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 47005903 - 47005839
Alignment:
Q  98 gttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||| ||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  47005903 gttaacccaaaagggtctggttactgacgtattggactcatccctcgatcttagttcttacgcgt 47005839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 24405024 - 24405116
Alignment:
Q  97 tgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggt 190  Q
    ||||||||||||||| | |||||| ||||||||| |||||||| |||||||  ||||||||||||| |||  ||||| | ||||||||||||||    
T  24405024 tgttaacccgaaagggtttggttattaacgtattggactcatctctcgatcatagttcttacgcgtctgttggaaaccg-ttgtgtttggtggt 24405116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 3153874 - 3153978
Alignment:
Q  71 ttcaaaaacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctga 170  Q
    |||||||||| ||||||||    ||||||||||| |||||  |||||||||||||||||| ||||||| | | ||||| ||||||||| ||| ||  |||    
T  3153874 ttcaaaaacccgaaagggtccaattctgttaacctgaaagagtctggttactaacgtatttgactcattctttgatctaagttcttacacgtttgattga 3153973  T
Q  171 aactg 175  Q
    |||||    
T  3153974 aactg 3153978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 51664039 - 51663954
Alignment:
Q  77 aacctgaaagggtatggttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||| ||||| || ||||||  ||||||||||||| |||||||||| || ||||  ||||||| |||||||| |||| ||||||||    
T  51664039 aacccgaaagagtctggttcgattaacccgaaagggtctggttactgacatattaaactcatcgctcgatctaagtttttacgcgt 51663954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 23085225 - 23085171
Alignment:
Q  105 cgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    |||||||||||||||||| |||||||  ||| || ||||||| ||||||||||||    
T  23085225 cgaaaggatctggttactgacgtattgaacttattcctcgatttgagttcttacg 23085171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 28421122 - 28421160
Alignment:
Q  124 acgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  28421122 acgtattggactcatccctcgatttgagttcttacgcgt 28421160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 43335521 - 43335454
Alignment:
Q  82 gaaagggtatggttctgttaacccgaaaggatc---tggttactaacgtattcgactcatccctcgat 146  Q
    |||||||||||||||||||||| ||||||| ||   |||||| |||| ||||  ||||||||||||||    
T  43335521 gaaagggtatggttctgttaactcgaaagggtcagttggttattaacatattgaactcatccctcgat 43335454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 17768150 - 17768086
Alignment:
Q  99 ttaacccgaaaggatctggttacta-acgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||| ||||||||||| || ||||  ||| ||||||||||||||||||||| ||||    
T  17768150 ttaacccaaaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgt 17768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 19069451 - 19069387
Alignment:
Q  99 ttaacccgaaaggatctggttacta-acgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||| ||||| ||||||||||| || ||||  ||| ||||||||||||||||||||| ||||    
T  19069451 ttaacccaaaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgt 19069387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 42867427 - 42867467
Alignment:
Q  122 taacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  42867427 taacgtatttgactcatctctcgatctgcgttcttacgcgt 42867467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 24099391 - 24099480
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatctg---gttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    ||||| |||||||||||||| | ||||||||||||| ||||   |||| |||||||||  ||||||||||||||||||||| ||||||||    
T  24099391 aaacccgaaagggtatggttttattaacccgaaagggtctgttggttattaacgtattgaactcatccctcgatctgagtttttacgcgt 24099480  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 18274018 - 18274108
Alignment:
Q  104 ccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtatgtctgaaactgcttgtgtttggtggtttga 194  Q
    |||||||| |||||||||||||  ||| |||||||| ||||||| ||||| |||||||||||| |||||||| |||| ||| |||| ||||    
T  18274018 ccgaaagggtctggttactaacacattggactcatcactcgatcagagtttttacgcgtatgtttgaaactgattgtcttttgtggcttga 18274108  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 43168819 - 43168753
Alignment:
Q  93 gttctgttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacg 159  Q
    |||||||| |||||||||  ||||||| |||||||||| |||||||||||| || ||||||||||||    
T  43168819 gttctgtttacccgaaagagtctggttgctaacgtattagactcatccctcaatttgagttcttacg 43168753  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 12566897 - 12566960
Alignment:
Q  99 ttaacccgaaaggatctggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||| ||||||  |||||| || |||||||  ||||||||||||||||||||| ||||||||    
T  12566897 ttaacctgaaagggcctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 12566960  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 17589953 - 17589880
Alignment:
Q  76 aaacctgaaagggtatggttctgttaacccgaaaggatc--tggttactaacgtattcgactcatccctcgatct 148  Q
    ||||| ||||||||||| |||| ||||||||||||| ||  |||||||| |||| || |||||||||||||||||    
T  17589953 aaacccgaaagggtatgattctcttaacccgaaagggtctgtggttacttacgtgtt-gactcatccctcgatct 17589880  T

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Target: scaffold0174 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 30582 - 30629
Alignment:
Q  115 tggttactaacgtattcgactcatccctcgatctgagttcttacgcgt 162  Q
    |||||||||||||||| |||||||||| |||| |||||||| ||||||    
T  30582 tggttactaacgtattggactcatcccacgatatgagttctaacgcgt 30629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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