View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_high_6 (Length: 462)
Name: NF20345_high_6
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 52515392 - 52514950
Alignment:
| Q |
1 |
gatcctgctcacccaaaaccaaacagaagtggatacaatttcttctttgcagaacaacatccaaggctaaaacctcttcaccgagggaaggatcgagaga |
100 |
Q |
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| T |
52515392 |
gatcctgctcacccaaaaccaaacagaagtggatacaatttcttctttgcagaacaacatccaaggctaaaacctcttcaccgagggaaggaccgagaaa |
52515293 |
T |
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| Q |
101 |
ttagtaggaccattggtgaactctggaacaagttacctgaatcagaaaaagcagtaaggaatttgtttaacacatcttttatgagttggtttttatctct |
200 |
Q |
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| T |
52515292 |
ttagtaggaccattggtgaactctggaacaagttacctgaatcagaaaaagcagtaaggaatttgtttaacacatcttctatgagttgttttttatctct |
52515193 |
T |
|
| Q |
201 |
agtaaactttcaatccagttcctaaactatccttctcttacctatttggtctaagaactattgaaatgtaaaaagtagtctctaatctatctggttaatc |
300 |
Q |
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| T |
52515192 |
agtaaactttcaatccagttcctaaactatccttctcttacctatttggtctaagaactattgaaatgtaaaaagtagtctctaatctatctggttaatc |
52515093 |
T |
|
| Q |
301 |
aagttagtcccccagaagctttaaaaattagataatgatagctaagggattaagttacaggattattcctgacgcagaagctcagatatgcattatttgg |
400 |
Q |
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| T |
52515092 |
aagttagtcccccagaagctttaaaaattagagaatgatagctaagggattaaagtacaggattattcctgacgcagaagctcagatatgcattatttgg |
52514993 |
T |
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| Q |
401 |
ttattttatcttgtgtttttatgttaacatgttaagttgcacc |
443 |
Q |
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| T |
52514992 |
ttattttatcttgtgtttttatgttaacatgttaagttgcacc |
52514950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 438118 - 438188
Alignment:
| Q |
1 |
gatcctgctcacccaaaaccaaacagaagtggatacaatttcttctttgcagaacaacatccaaggctaaa |
71 |
Q |
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||||||||||| |||||||| ||||||||||| ||||||||||||||||| || || ||| |||| ||||| |
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| T |
438118 |
gatcctgctcatccaaaacccaacagaagtggttacaatttcttctttgctgagcagcatgcaagactaaa |
438188 |
T |
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