View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_high_8 (Length: 454)
Name: NF20345_high_8
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 27 - 438
Target Start/End: Complemental strand, 9334142 - 9333742
Alignment:
| Q |
27 |
catgattctaaacatatatttgtctaactcgaatctattgtttattatgttggtgtataattgtaagtcattgtataggggtgaagccatcttaatatcc |
126 |
Q |
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| T |
9334142 |
catgattgtaaacatatatttgtctaactcgaatctattgtttattatgttgttgtataattgtaagtcactgtataggggtgaagccatcttaatatcc |
9334043 |
T |
|
| Q |
127 |
attccaccatttcttagaagtgagcaagacaaggaatctatatctgtggttatgggacatggccctgctaaagtatctgtgccagatagtatgtagttga |
226 |
Q |
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| T |
9334042 |
attccaccatttcttagaagtgagcaagacaaggaaactatatctgtggttatgggacatggccctgctaaagtatctgtgccagatggtatgtagttga |
9333943 |
T |
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| Q |
227 |
tgttgtagatggtgaatttgaagctagtgttggctttgccgttgactttgtcacttgctttgttgaagctatttctcaaactaaggtgaaggctacttag |
326 |
Q |
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| T |
9333942 |
tgttgtagatggtgaatttgaagctagt------------gttgactttgtcacttgctttgttgaagctatttctcaaactaaggtgaaggctacttag |
9333855 |
T |
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| Q |
327 |
taggctttaccgagcctcattacactaatgaaatttgaggtgatacgcttgttgtcgtg-tttagtgtttaatttcaagtcatattgaataacgtttggt |
425 |
Q |
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| T |
9333854 |
tagactttaccgagcctcattacactaatgaaatttgaggtgatacgcttgttgtcgtgttttagtgtttaatttcaagtcattttgaataaagtttggt |
9333755 |
T |
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| Q |
426 |
tttgatttatttg |
438 |
Q |
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| T |
9333754 |
tttgatttatttg |
9333742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 244 - 381
Target Start/End: Complemental strand, 9331616 - 9331479
Alignment:
| Q |
244 |
ttgaagctagtgttggctttgccgttgactttgtcacttgctttgttgaagctatttctcaaactaaggtgaaggctacttagtaggctttaccgagcct |
343 |
Q |
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| T |
9331616 |
ttgaagctagtgttggcttcgtggttgactttgtcacttactttgttgaagctatttctcaagctaagttgaaagctacttagtagactttaccgaggtt |
9331517 |
T |
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| Q |
344 |
cattacactaatgaaatttgaggtgatacgcttgttgt |
381 |
Q |
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| T |
9331516 |
gattacactaatgaaattggaggtgatacacttgttgt |
9331479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 8207413 - 8207364
Alignment:
| Q |
113 |
ccatcttaatatccattccaccatttcttagaagtgagcaagacaaggaa |
162 |
Q |
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| T |
8207413 |
ccatcttaatatgtattccaccattttttagatctgagcaagacaaggaa |
8207364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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