View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_low_10 (Length: 432)
Name: NF20345_low_10
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 54226075 - 54226478
Alignment:
| Q |
13 |
cctgtgtcaagtgtagatcaatacatattgaaaagatcaaggaaaagccaagcacgagaaactatcaatgaagagttaaacatcatatatttatatagct |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54226075 |
cctgtgtcaagtgtagatcaatacatattgaaaagatcaaggaaaagccaagcacaagaaactatcaatgaagagttaaacatcatatatttatatagct |
54226174 |
T |
|
| Q |
113 |
aagaattaagatattagtttaattagcaaagaatcgtgtttaatatcaatgaattaaatgcacaagaatgtttggattgtagagtatggacttacccact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54226175 |
aagaattaagatattagtttaattagcaaagaatcgtgtttaatatcaatgaattaaatgcacaagaatgtttggattgtagagtatggacttacccact |
54226274 |
T |
|
| Q |
213 |
ctagcatagcacctttttgattcaaggttttcccaaactcaagggctgtcattccggttataagctctaataagagaatgccgaatccaaacacatcagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54226275 |
ctagcatagcacctttttgattcaaggttttcccaaactcaagggctgtcattccggttataagctctaataagagaatgccgaatccaaacacatcagt |
54226374 |
T |
|
| Q |
313 |
tttctcagatgattggccagtcgagaggtactccggtgcaatgtgtccaacagtgccacgtacagcagtggtgacatgagaatcagcatgatcaaggagc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54226375 |
tttctcagatgattggccagtcgagaggtactccggtgcaatgtgtccaacagtgccacgtacagcagtggtgacatgagaatcagcatgatcaaggagc |
54226474 |
T |
|
| Q |
413 |
tttg |
416 |
Q |
| |
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|||| |
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|
| T |
54226475 |
tttg |
54226478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 37424892 - 37425294
Alignment:
| Q |
13 |
cctgtgtcaagtgtagatcaatacatattgaaaagatcaaggaaaagccaagcacgagaaactatcaatgaagagttaaacatcatatatttatatagct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37424892 |
cctgtgtcaagtgtagatcaatacatattgaaaagataatggaaaagccaagcacgagaaactactaatgaagagttaaacatcatatatttatatagct |
37424991 |
T |
|
| Q |
113 |
aagaattaagatattagtttaattagcaaagaatcgtgtttaatatcaatgaattaaatgcacaagaatgtttggattgtagagtatggacttacccact |
212 |
Q |
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| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424992 |
a-gaattaagatattagattaattagcaaagaattgtgtttaatatcaatgaattaaatgcacaagaatgtttggattgtagagtatggacttacccact |
37425090 |
T |
|
| Q |
213 |
ctagcatagcacctttttgattcaaggttttcccaaactcaagggctgtcattccggttataagctctaataagagaatgccgaatccaaacacatcagt |
312 |
Q |
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|
||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37425091 |
ctagcatagcacccttttgattcaaggtttttccaaactcaagggttgtcattccagttataagctctaataagagaatgccgaatccaaacacatcagt |
37425190 |
T |
|
| Q |
313 |
tttctcagatgattggccagtcgagaggtactccggtgcaatgtgtccaacagtgccacgtacagcagtggtgacatgagaatcagcatgatcaaggagc |
412 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37425191 |
tttctcagatgattggccagtcgagaggtactttggtgcaatgtgtccaacagtgccacgtacagcagtggtgacatgggaatcagcatgatcaaggagc |
37425290 |
T |
|
| Q |
413 |
tttg |
416 |
Q |
| |
|
|||| |
|
|
| T |
37425291 |
tttg |
37425294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 259 - 416
Target Start/End: Complemental strand, 49023105 - 49022948
Alignment:
| Q |
259 |
tgtcattccggttataagctctaataagagaatgccgaatccaaacacatcagttttctcagatgattggccagtcgagaggtactccggtgcaatgtgt |
358 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49023105 |
tgtcattctagttataagctctaataagagaatgccgaatccaaacacatcagttttctcagatgattggccagtcgagaggtacttcggtgcaatgtgt |
49023006 |
T |
|
| Q |
359 |
ccaacagtgccacgtacagcagtggtgacatgagaatcagcatgatcaaggagctttg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
49023005 |
ccaacagtgccacgtacagcagtggtgacatgggaatcagcatgatcaaggagctttg |
49022948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 396
Target Start/End: Original strand, 5854010 - 5854119
Alignment:
| Q |
287 |
agaatgccgaatccaaacacatcagttttctcagatgattggccagtcgagaggtactccggtgcaatgtgtccaacagtgccacgtacagcagtggtga |
386 |
Q |
| |
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||||||||||| |||||||||||||| ||||| || ||||| || || || || || ||||||||||| || || ||||| || | || ||||| |||| |
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| T |
5854010 |
agaatgccgaacccaaacacatcagtcttctcggaggattgtcctgtggacagatattccggtgcaatatgccctacagttcctctcactgcagttgtga |
5854109 |
T |
|
| Q |
387 |
catgagaatc |
396 |
Q |
| |
|
|||| ||||| |
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|
| T |
5854110 |
catgtgaatc |
5854119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 5066200 - 5066100
Alignment:
| Q |
296 |
aatccaaacacatcagttttctcagatgattggccagtcgagaggtactccggtgcaatgtgtccaacagtgccacgtacagcagtggtgacatgagaat |
395 |
Q |
| |
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|||||||| ||||| ||||| ||||| || || ||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||| || ||||| |||| |
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| T |
5066200 |
aatccaaaaacatctgttttttcagaagactgtccagttgagagatactcgggggcaatgtgtcctacagtgccacgtactgcagtagttacatgtgaat |
5066101 |
T |
|
| Q |
396 |
c |
396 |
Q |
| |
|
| |
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|
| T |
5066100 |
c |
5066100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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