View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_low_11 (Length: 408)
Name: NF20345_low_11
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 26937684 - 26937292
Alignment:
| Q |
1 |
attcaacaacaacatggttctcaagtatgtttatcggatcagatctgtcatgttttgattctatttctctttctttgttcctattgcaacgttgtttacg |
100 |
Q |
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| T |
26937684 |
attcaacaacaacatggttctcaagtatgtttatcggatcagatctgtcatgttttgattctatttctctttctttgttcctattgcaacgttgtttacg |
26937585 |
T |
|
| Q |
101 |
atttagaattatcaaaatttaatgtcgaattcatatagtttggtttggattaacannnnnnnnnattgaaaatggattagtttgctataatctgtttgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
26937584 |
atttagaattatcaaaatttaatgtcgaattcatatagtttggtttggattaacatttttttttattgaaaatggattagttcgctataatctgtttgag |
26937485 |
T |
|
| Q |
201 |
attattggtagaaatgtgacatcattagctaaaaatctgtataaattaaactttannnnnnnaattattgaaatgttgttagtgataatgttacttttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
26937484 |
attattggtagaaatgtgacatcattagctaaaaatatgtataaattaaactttatttttttaattattgagatgttgtttgtgataatgttacttttct |
26937385 |
T |
|
| Q |
301 |
gattgtaagaaatggatgcatttaacaaatgtgttaatgggtattttatatttgtgtgttaggaccgaattgtgccgattcagtggtgccaag |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26937384 |
gattgtaagaaatggatgcatttaacaaatgtgttaataggtattttatatttgtgtgttaggaccgaattgtgccgattcagtggtgccaag |
26937292 |
T |
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