View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20345_low_12 (Length: 388)
Name: NF20345_low_12
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 41746782 - 41747133
Alignment:
| Q |
16 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacatggttcaacacatattttataactcaatctt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41746782 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacacggttcaacacatattttataactcaatctt |
41746881 |
T |
|
| Q |
116 |
ttattagttaaaattcatataaatctcatataaatttggtgggactcctatgaattgtaactaataataagaaagaccgtggtaaagagtgtgtttctaa |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41746882 |
ttattagttaaaattcatctaaatctcatataaatttggtgggactcttatgaattgtaactaataataaaaaagaccgtggtaaagagtgtgtttctaa |
41746981 |
T |
|
| Q |
216 |
cgttattctttattgggtagtttgcgcacactgaaatttcaggttttactaaaacaatacaatatttggtaagaattaaaggtttttatatatcttcaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
41746982 |
cgttattctttattgggtagtttgcgcacactgaaatttcaggttttactaaaacaatacaatattcggtaagaattagaggtttt----tatcttcaat |
41747077 |
T |
|
| Q |
316 |
tttgcggagagaagattgcaccctcttgtaaactgcatgccaaccattttgagaag |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747078 |
tttgcggagagaagattgcaccctcttgtaaactgcatgccaaccattttgagaag |
41747133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 33029563 - 33029523
Alignment:
| Q |
140 |
ctcatataaatttggtgggactcctatgaattgtaactaat |
180 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
33029563 |
ctcatataaatttggtgggacttatatgaattttaactaat |
33029523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University