View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_low_14 (Length: 336)
Name: NF20345_low_14
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 1351428 - 1351158
Alignment:
| Q |
18 |
agtgagtgaattggctgttactgcatgaggaagattagaaaataaaaaataaatggaaatcatgctgaaggtatgcaaggaattgcaattcccaaccagt |
117 |
Q |
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| T |
1351428 |
agtgagtgaattggctgttactgcatgaggaagattagaaaataaaaaataaatggaaatcatgctgaaggtatgcaaggaattgcaattcccaaccagt |
1351329 |
T |
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| Q |
118 |
aaaagctaaggcccaaaatttagcgtatgaagatgagtttgagaccgcggattgctttttggagcgccggcgatattcagttcataatttctgtcaaaaa |
217 |
Q |
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| T |
1351328 |
aaaagctaaggcctaaaatttagcgtatgaagatgagtttgagaccgcggattgctttttggagcgccagcgatattcagttcataatttctgtcaaaaa |
1351229 |
T |
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| Q |
218 |
tatttcttgcaaagatgtactgattgtgcataattttggtaaagatgagaatgaattaggtggaaatgcaa |
288 |
Q |
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| T |
1351228 |
tatttcttgcaaagatgtactgattgtgcataattttggtaaagatgagaatgaattaggtggaaatgcaa |
1351158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 285
Target Start/End: Complemental strand, 1359186 - 1359035
Alignment:
| Q |
135 |
atttagcgtatgaagatgagtttgagaccgcggattgctttttggagcgccggcgatattcagttcataatttctg-tcaaaaatatttcttgcaaagat |
233 |
Q |
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| T |
1359186 |
atttagcgtatgaaaataactttgagaccgtggattgctttttggagcgtcaacgatatgcagttcataatttctgctcaaaaaagtttcttgtaaagat |
1359087 |
T |
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| Q |
234 |
gtactgattgtgcataattttggtaaagatgagaatgaattaggtggaaatg |
285 |
Q |
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| T |
1359086 |
gtactgattgtgcataattttggtgaaaatgagaaagaattatctggaaatg |
1359035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 1391940 - 1391874
Alignment:
| Q |
119 |
aaagctaaggcccaaaatttagcgtatgaagatgagtttgagaccgcggattgctttttggagcgcc |
185 |
Q |
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| T |
1391940 |
aaagctaaggccgaatatttagcgtataaagatgactttgagactgtggattgctttttggagcgcc |
1391874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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