View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20345_low_17 (Length: 312)
Name: NF20345_low_17
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 54423237 - 54423513
Alignment:
| Q |
18 |
attagagctgaatgcaatagccgattcaccataatttattgcttgcccggatgcatgctcataatgagagagcttccttgagatgttgcgcttcagccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
54423237 |
attagagctgaatgcaatagccgattcaccataatttattgcttgcccggatgcatgctcataatgagagagtttccttgagatgttgcacttcagccat |
54423336 |
T |
|
| Q |
118 |
tgttgctttacaaaat-aaaaaactgtcatctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgcatcttgcctcttaa |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54423337 |
tgttgctttacaaaataaaaaaactgtcatctgtaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgtatcttgcctcttaa |
54423436 |
T |
|
| Q |
217 |
ctcgctg-ttttttatggatgctgataatccttctgcgcaaagaatgtatagatatggtgagagtggggagccttga |
292 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54423437 |
ctcgctgtttttttatggatgctgataatccttctacacaaagaatgtatagatatggtgagagtgggcagccttga |
54423513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 20127880 - 20127605
Alignment:
| Q |
18 |
attagagctgaatgcaatagccgattcaccataatttattgcttgcccggatgcatgctcataatgagagagc--ttccttgagatgttgcgcttcagcc |
115 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||| |
|
|
| T |
20127880 |
attagagctgaaagctatagccgatttaccatagtttattgcttggccggatgcatgctcatagtgcgagagaatttccttgagatgttgcgtttcagcc |
20127781 |
T |
|
| Q |
116 |
attgttgctttacaaaataaaaaactgtcatctgcaaataataagtgactgataggcggggctgtgcgacagatacgagtgccgtgcatcttgcctctta |
215 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| || || | ||| ||||||| |
|
|
| T |
20127780 |
attgttgctttgcagaataaaaaactgtcatctgcaaataataggtgactgataggtggggctgtgcgacaaatacgagttccatgaacctttcctctta |
20127681 |
T |
|
| Q |
216 |
actcgctgttttttatggatgctgataatccttctgcgcaaagaatgtatagatatggtgagagtggggagccttg |
291 |
Q |
| |
|
| || ||||||||| | ||| |||||||||||||||||||| |||||||| || |||||||| ||| ||||||| |
|
|
| T |
20127680 |
attcatagttttttatagctgcagataatccttctgcgcaaaggatgtataggtaaggtgagagggggcagccttg |
20127605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 15162882 - 15162918
Alignment:
| Q |
126 |
tacaaaataaaaaactgtcatctgcaaataataagtg |
162 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15162882 |
tacaaaataaaaaacagtcatctgcaaataataagtg |
15162918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University