View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20345_low_19 (Length: 297)
Name: NF20345_low_19
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 15393967 - 15393702
Alignment:
| Q |
16 |
atacagaaaacattggaaacagaacaaaaacttatgtagttaccaaaaaactgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15393967 |
atacagaaaacattggaaacagaacaaaaacttatgtagttaccaaaaaactgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaag |
15393868 |
T |
|
| Q |
116 |
ccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaattttattgtatttttaaaattggggtagagtgtagtgannnnnnnnnnnnn |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15393867 |
ccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaattttattgtatttttaaaattggggaagagtgtagtgatattattattatt |
15393768 |
T |
|
| Q |
216 |
nnnnaagtgacatcaacgatcattttacatcatttctcgagtgatattattatttattgaaaatca |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15393767 |
attaaagtgacatcaacgatcattttacatcatttctcgagtgatattatgatttattgaaaatca |
15393702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University