View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_low_2 (Length: 679)
Name: NF20345_low_2
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 526 - 669
Target Start/End: Complemental strand, 37162687 - 37162544
Alignment:
| Q |
526 |
ctcgcgatgtaaagcaatgctgtatttttatatggcattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattg |
625 |
Q |
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| T |
37162687 |
ctcgcgatgtatagcaatgctgtatttttatatggcattattaacttctgactgcccatacaagagtggagtaatgttgcaaaatagtggattttgattg |
37162588 |
T |
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| Q |
626 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttc |
669 |
Q |
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| T |
37162587 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttc |
37162544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 37164675 - 37164527
Alignment:
| Q |
94 |
ataacctgtgtttatgcagaatctagctatttaagttatcacgacctcacttcaaaatacatattatctctaattgacttctgaatacatatcatcttta |
193 |
Q |
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| T |
37164675 |
ataacccgtgtttatgcagaatctagctattt----tatcacgacctcacttcaaaatacatattatctctaattgacttctgaatacatatcatcttta |
37164580 |
T |
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| Q |
194 |
attgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
246 |
Q |
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| T |
37164579 |
gttgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
37164527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 532
Target Start/End: Complemental strand, 37162730 - 37162695
Alignment:
| Q |
497 |
atcaaaggctttttgctgtcgggataacactcgcga |
532 |
Q |
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| T |
37162730 |
atcaaaggctttttgctgtcgggataacactcgcga |
37162695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 37164739 - 37164707
Alignment:
| Q |
65 |
taagcatgtgttaatcttttcaaatacatataa |
97 |
Q |
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| T |
37164739 |
taagcatgtgttaatcttttcaaatacatataa |
37164707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 37162793 - 37162748
Alignment:
| Q |
417 |
accagtgctgtattgtgtggtaaaccgcctgaaagctatgtggggcctt |
465 |
Q |
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| T |
37162793 |
accagtgctgtattgtg--gtaa-ccgcctgaaagctatgtggggcctt |
37162748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 668
Target Start/End: Complemental strand, 596529 - 596422
Alignment:
| Q |
561 |
cattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaactgttttcttctgacggtgt |
660 |
Q |
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| T |
596529 |
cattattaacttgtaactacccatacaagagtggggttatgtggcaaaatagttgattttgattgaatgttagtgtaaaactggttttaattgacggtgg |
596430 |
T |
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| Q |
661 |
atattctt |
668 |
Q |
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| T |
596429 |
atattctt |
596422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 641
Target Start/End: Original strand, 49250276 - 49250327
Alignment:
| Q |
590 |
agtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaac |
641 |
Q |
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| T |
49250276 |
agtggggtgatgttgcaaaatagtggattttcattggatgttaatgtaaaac |
49250327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 648
Target Start/End: Complemental strand, 17511398 - 17511349
Alignment:
| Q |
599 |
atgttgcaaaatagtggattttgattggatattagtgtaaaactgttttc |
648 |
Q |
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| T |
17511398 |
atgtggcaaagtagtggattttcattggatgtcagtgtaaaactgttttc |
17511349 |
T |
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