View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_low_4 (Length: 527)
Name: NF20345_low_4
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 22443841 - 22443945
Alignment:
| Q |
3 |
aaaagctattagtccttcaaaacttatatagcacaaagtccaacagtgtgatcggaaattcaatttttctttttaaattttgacgtacaagaggaagctg |
102 |
Q |
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| T |
22443841 |
aaaagctattagtccttcaaaacttatatagcataaagtccaacagtgtgatctgaaattcattttttatttttaaattttgtcatacaagaggaagctg |
22443940 |
T |
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| Q |
103 |
tcaat |
107 |
Q |
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||||| |
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| T |
22443941 |
tcaat |
22443945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 22469020 - 22469155
Alignment:
| Q |
3 |
aaaagctattagtccttcaaaacttatatagcacaaagtccaacagtgtgatcggaaattcaatttttctttttaaattttgacgtacaa----gaggaa |
98 |
Q |
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| T |
22469020 |
aaaagctatcagtccttcaaaatttatatagcataaagtccaacagtgtgatagaaaattcattctctctttttcaattttgtcgtgcaactttgaggaa |
22469119 |
T |
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| Q |
99 |
gctgtcaatcatgtgcttcaacttgctgttagtgtt |
134 |
Q |
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| T |
22469120 |
gctgtcaatcatgtgcttcaattagctgttagtgtt |
22469155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 22469237 - 22469336
Alignment:
| Q |
206 |
gtttcttaattctcaatcacatggccattattttatgtacattgcaagttggatttaggtaattgatatcgttgactttacaatgtattttttaaagaga |
305 |
Q |
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||||| |||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||| |
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| T |
22469237 |
gtttcataattcacaatcacatggacattattttatatatattgcaagttggatttagaaaattcatatcgttgacttaacaacatattttttaaagaga |
22469336 |
T |
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