View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20345_low_5 (Length: 522)
Name: NF20345_low_5
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 64 - 388
Target Start/End: Complemental strand, 38221780 - 38221442
Alignment:
| Q |
64 |
attcttaaacatgaccaaatcgcggatattaaaaaatcatatatgagacattatcaattgcatgatgcatcagaattagaaagagaagaaactttttggg |
163 |
Q |
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| T |
38221780 |
attcttaaacatgaccaaatcgcggatattaaaaaatcatatatgagacattatcaattgcatgatgcatcagaattagaaagagaagaaactttttggg |
38221681 |
T |
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| Q |
164 |
atcatcaagcatcatgataaaggcattcatgattaacagtttcgaattgtgagtatgttctacagctccatatac--------------agttaatggtt |
249 |
Q |
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| T |
38221680 |
atcatgaagcatcatgataaaggcactcatgattaacagtttggaattgtgagtaggttctacagctccatatacttccactgctctatagttaatggtt |
38221581 |
T |
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| Q |
250 |
ggtaacaaaaccaatgcctcaccttcaatgacaagaatttcaagacttgtcttaaattttgcactaaattgacattaacaaacgcttgagtagaagaaaa |
349 |
Q |
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| T |
38221580 |
ggtaacaaaaccaatgcctcaccttcaatgacaagaatttcaagacttgtcttatattttgcactaaattgacattaacaaacgcttgagtagaagaaaa |
38221481 |
T |
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| Q |
350 |
ataaccaattacagtaacgtcaagacttacagatataga |
388 |
Q |
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| T |
38221480 |
ataaccaattacagtaacgtcaagacttacagatataga |
38221442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 385 - 504
Target Start/End: Complemental strand, 38221384 - 38221264
Alignment:
| Q |
385 |
tagaaaataacaggttgttggaattccgctacgctatagtcctattaaataacactgtactaatcaacgtattactaagtacatttacgtgacaatat-t |
483 |
Q |
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| T |
38221384 |
tagaaaataacaggttgttggaattccgctacgctatagtcctattaaataacactgtactaatcaacgtattactaagtacatttacgtgacaatatat |
38221285 |
T |
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| Q |
484 |
atgagttttcaatggatgttg |
504 |
Q |
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| T |
38221284 |
atgagttttcaatggatgttg |
38221264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 38151097 - 38150988
Alignment:
| Q |
16 |
atactctttgtgccatctgattcagagttgcatagaaagaagtaagctattcttaaacatgaccaaatcgcggatattaaaaaatcatatatgagacatt |
115 |
Q |
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| T |
38151097 |
atactctttgtgccatccgattcagagttgtatagaaagaagtgagctattgcaaaacataaccaaattgcggacactaaataacgaaacatgaggcatt |
38150998 |
T |
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| Q |
116 |
atcaattgca |
125 |
Q |
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| T |
38150997 |
atcaattgca |
38150988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 38178236 - 38178295
Alignment:
| Q |
444 |
ctaatcaacgtattactaagtacatttacgtgacaatattatgagttttcaatggatgtt |
503 |
Q |
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| T |
38178236 |
ctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgtt |
38178295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 38205460 - 38205519
Alignment:
| Q |
444 |
ctaatcaacgtattactaagtacatttacgtgacaatattatgagttttcaatggatgtt |
503 |
Q |
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| T |
38205460 |
ctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgtt |
38205519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 38156995 - 38156931
Alignment:
| Q |
440 |
tgtactaatcaacgtattactaagtacatttacgtgacaatattatgagttttcaatggatgttg |
504 |
Q |
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| T |
38156995 |
tgtactaatcagcgtattacaaaatacacttacgtgacaatatcatgagttttcagtggatgttg |
38156931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 38168008 - 38167973
Alignment:
| Q |
469 |
ttacgtgacaatattatgagttttcaatggatgttg |
504 |
Q |
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| T |
38168008 |
ttacgtgacaatatcatgagttttcaatggatgttg |
38167973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 38199096 - 38199131
Alignment:
| Q |
469 |
ttacgtgacaatattatgagttttcaatggatgttg |
504 |
Q |
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| T |
38199096 |
ttacgtgacaatatcatgagttttcaatggatgttg |
38199131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 38157072 - 38157028
Alignment:
| Q |
385 |
tagaaaataacaggttgttggaattccgctacgctatagtcctat |
429 |
Q |
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| T |
38157072 |
tagaaaataataggttgttagaattccgctatgctatagtactat |
38157028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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