View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20345_low_7 (Length: 458)
Name: NF20345_low_7
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_7 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 35035563 - 35036004
Alignment:
| Q |
1 |
actagttaggatcatattacaggttatcaatacacataatattttcttactgaaaccatataatcatacagcaatatataacagtttgatagagtttcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35035563 |
actagttaggatcatattacaggttatcaatacacataatattttcttattgaaaccatataatcatacaacaatatataacagtttgatagagtttcta |
35035662 |
T |
|
| Q |
101 |
ctaattagaaaatcacctgactaattcttgaagcttctcacagaatccatcaacacaagatgattccaaatcttggtttaacaaaaggttcctgagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35035663 |
ctaattagaaaatcacctgactaattcttgaagcttctcacagaaaccatcaacacaagatgactccaaatcttggtttaacaaaaggttcctgagttta |
35035762 |
T |
|
| Q |
201 |
tcatgattattcctaacttctctgccaatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccatcttctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35035763 |
tcatgattattcctaacttctctgccaatctcattctcatcatccataacaattttcacagcttcacaaacactttccttagtgaacaatccatcttctt |
35035862 |
T |
|
| Q |
301 |
cacccttcttcacttcaactccaaccttcaatttcatacccataatctttgcattaatgatatgatcagcatctaaatgtggaatcaacaccatctgaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35035863 |
cacccttcttcacttcaactccaaccttcaatttcatacccataatctttgcattaatgatatgatcagcatctaaatgtggaatcaacaccatctgaca |
35035962 |
T |
|
| Q |
401 |
attatttgtcagcccctctgtcaacgaaccggccccacagtg |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35035963 |
attatttgtcagcccctctgtcaacgaaccggccccacagtg |
35036004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 65 - 430
Target Start/End: Complemental strand, 35010306 - 35009941
Alignment:
| Q |
65 |
catacagcaatatataacagtttgatagagtttctactaattagaaaatcacctgactaattcttgaagcttctcacagaatccatcaacacaagatgat |
164 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |
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|
| T |
35010306 |
catacaacaatatataacagtttgatagagtttctactaattagaaaatcacctgactaatttttgaagcttctcacagaaaccatcaacacaggatgac |
35010207 |
T |
|
| Q |
165 |
tccaaatcttggtttaacaaaaggttcctgagtttatcatgattattcctaacttctctgccaatctcattctcatcatccataacaattttcacagctt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35010206 |
tccaaatcttggtttaacaaaaggttcctgagtttatcatgattattcctaacttctctgccaatctcattctcatcatccataacaattttcacagctt |
35010107 |
T |
|
| Q |
265 |
cacaaacactttcctttgtgaacaatccatcttcttcacccttcttcacttcaactccaaccttcaatttcatacccataatctttgcattaatgatatg |
364 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||| |
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|
| T |
35010106 |
cacaaacactttccttagtgaacaatccatcttcatcacccttgttcacttcaactccaaccttcaattccctacccataatcttagtattagtgatatg |
35010007 |
T |
|
| Q |
365 |
atcagcatctaaatgtggaatcaacaccatctgacaattatttgtcagcccctctgtcaacgaacc |
430 |
Q |
| |
|
|||| |||||||||| || |||||||| ||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
35010006 |
atcaccatctaaatgaggcatcaacacgatctgacaattatttatcaacccctctgtcaacgaacc |
35009941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 51 - 439
Target Start/End: Complemental strand, 36289870 - 36289481
Alignment:
| Q |
51 |
tgaaaccatataatcatacagcaatatataacagtttgatagagtttctactaattagaaaatcacctgactaattcttgaagcttctcacagaatccat |
150 |
Q |
| |
|
|||| ||||||| | ||||| || ||||| ||| | |||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| || |
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|
| T |
36289870 |
tgaacccatatactgatacaacagtatattacaactggatacagtttctactaattagaaaatcgcctggttaattcttgaagcttctcacagaaaacac |
36289771 |
T |
|
| Q |
151 |
caacacaagatgattccaaatcttggtttaacaaaaggttcctgagtttatcatgattattcctaacttctctgccaatctcattctcatcatccataac |
250 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| || || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
36289770 |
caacacaagatgactccaaatcatggcttaataagagcttcctcaatttatcatgattattcctaacttctctgccaatctcattctcatcatccatcac |
36289671 |
T |
|
| Q |
251 |
aattttcacagcttcacaaacactttcctttgtgaacaatccatcttcttcacccttcttcacttcaactccaaccttcaatttcatacccataatcttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||| ||||||||| |
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|
| T |
36289670 |
aattttcacagcttcacaaacactttccttagtgaacaatccatcttctttacccttcttcacttcaactccagccttcaattccctactcataatctta |
36289571 |
T |
|
| Q |
351 |
gcattaatgatatgatcagcatctaaatgtgg-aatcaacaccatctgacaattatttgtcagcccctctgtcaacgaaccggccccaca |
439 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
36289570 |
gcattaatgatatgatcagtatctaaatgtggccatcaacaccatctgacaattatttatcaacccctctgtcaacgaaccagccccaca |
36289481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 330
Target Start/End: Complemental strand, 35027432 - 35027305
Alignment:
| Q |
203 |
atgattattcctaacttctctgccaatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccatcttcttca |
302 |
Q |
| |
|
|||||| || || |||||||| |||| | ||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||| |
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|
| T |
35027432 |
atgattttttctcacttctcttccaactttattctcatcatccatcacaattttcacagcttcacacacactttcttttgtaaacaacccatcttcatca |
35027333 |
T |
|
| Q |
303 |
cccttcttcacttcaactccaaccttca |
330 |
Q |
| |
|
|| |||| ||||| || |||||||||| |
|
|
| T |
35027332 |
cctttctcaacttccacaccaaccttca |
35027305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 369
Target Start/End: Original strand, 35011215 - 35011359
Alignment:
| Q |
225 |
ccaatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccatcttcttcacccttcttcacttcaactccaa |
324 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| |||||||||| || |||||||| ||||| ||||| |||||||||||||| |||| ||||| || |||| |
|
|
| T |
35011215 |
ccaacctcgttctcatcatccatcacaatcttcacagctttgcacacactttcttttgtaaacaacccatcttcttcacctttctcaacttccacaccaa |
35011314 |
T |
|
| Q |
325 |
ccttcaatttcatacccataatctttgcattaatgatatgatcag |
369 |
Q |
| |
|
|||| || || ||| ||| || ||||||| ||||||||||||| |
|
|
| T |
35011315 |
cctttaacttactactcatcattcttgcattcatgatatgatcag |
35011359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 369
Target Start/End: Complemental strand, 35030303 - 35030060
Alignment:
| Q |
126 |
tcttgaagcttctcacagaatccatcaacacaagatgattccaaatcttggtttaacaaaaggttcctgagtttatcatgattattcctaacttctctgc |
225 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| || || |||| | |||| |||| ||||| | || || |||||| ||||| |||||||| | |
|
|
| T |
35030303 |
tcttgaagcttttcacagaaactatcaacacaagaggactctaaattgtcacttaataaaaacttccttaattcattatgatttttcctcacttctcttc |
35030204 |
T |
|
| Q |
226 |
caatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccatcttcttcacccttcttcacttcaactccaac |
325 |
Q |
| |
|
||| ||||||| | |||| ||| ||||| |||||||||| || ||| |||| ||||| ||||| |||||||| ||||| |||| ||||| || ||||| |
|
|
| T |
35030203 |
caacctcattcccttcatgcatcacaatcttcacagctttgcacacattttcttttgtaaacaacccatcttcatcacctttctcaacttccacaccaac |
35030104 |
T |
|
| Q |
326 |
cttcaatttcatacccataatctttgcattaatgatatgatcag |
369 |
Q |
| |
|
|| || || ||| ||| || ||||||||||||||||||||| |
|
|
| T |
35030103 |
tttaaactttttactcatcattcttgcattaatgatatgatcag |
35030060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 35034428 - 35034310
Alignment:
| Q |
216 |
acttctctgccaatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccatcttcttcacccttcttcactt |
315 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||| |||||| || |||||||| ||||| ||||| |||||||| ||||| |||| |||| |
|
|
| T |
35034428 |
acttctcttccaatctcattctcgtcatccattacaatttttgcagctttgcacacactttcttttgtaaacaacccatcttcatcacctttctcaactt |
35034329 |
T |
|
| Q |
316 |
caactccaaccttcaattt |
334 |
Q |
| |
|
| || |||||||| ||||| |
|
|
| T |
35034328 |
ccacaccaaccttaaattt |
35034310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 369
Target Start/End: Original strand, 34997787 - 34997961
Alignment:
| Q |
195 |
agtttatcatgattattcctaacttctctgccaatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccat |
294 |
Q |
| |
|
|||||| |||||||| || ||||| || |||| |||||||||||||||||| ||||| |||||||||| || |||||||| || || ||||| |||| |
|
|
| T |
34997787 |
agtttagcatgattagctctcacttcccttccaacctcattctcatcatccatcacaatcttcacagctttgcacacactttctttcgtaaacaacccat |
34997886 |
T |
|
| Q |
295 |
cttcttcacccttcttcacttcaactccaaccttcaatttcatacccataatctttgcattaatgatatgatcag |
369 |
Q |
| |
|
|||| ||||| |||| |||| | ||||||||||| || ||| ||| || ||||||| ||||||||||||| |
|
|
| T |
34997887 |
cttcatcacctttctcaacttttataccaaccttcaacttattactcatcattcttgcattcatgatatgatcag |
34997961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 35017306 - 35017244
Alignment:
| Q |
93 |
agtttctactaattagaaaatcacctgactaattcttgaagcttctcacagaatccatcaaca |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
35017306 |
agtttctactaattaggaaatcacctgactaattctccaagcttctcgcagaaaccatcaaca |
35017244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 35018232 - 35018320
Alignment:
| Q |
216 |
acttctctgccaatctcattctcatcatccataacaattttcacagcttcacaaacactttcctttgtgaacaatccatcttcttcacc |
304 |
Q |
| |
|
|||||| | |||| |||||||||||||||||| |||||| ||||||| | | |||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
35018232 |
acttcttttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacc |
35018320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 34997634 - 34997586
Alignment:
| Q |
253 |
ttttcacagcttcacaaacactttcctttgtgaacaatccatcttcttc |
301 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||| ||||||| |
|
|
| T |
34997634 |
ttttcacagcttcacaagcacttttttttgtgaacaacccaacttcttc |
34997586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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