View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20345_low_9 (Length: 438)
Name: NF20345_low_9
Description: NF20345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20345_low_9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 36627604 - 36627195
Alignment:
| Q |
13 |
aaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcaccct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36627604 |
aaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcaccct |
36627505 |
T |
|
| Q |
113 |
tgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaaaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36627504 |
tgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttcccagaaatggtgataaagaaagaaaacaatgtcgtatttaaaag |
36627405 |
T |
|
| Q |
213 |
gtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgcatggatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36627404 |
gtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcaagtacaagttgtaactgcatggatt |
36627305 |
T |
|
| Q |
313 |
tacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgtctgaac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36627304 |
tacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggttcctccattgtctgaac |
36627205 |
T |
|
| Q |
413 |
aatgtgtagg |
422 |
Q |
| |
|
| |||||||| |
|
|
| T |
36627204 |
attgtgtagg |
36627195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 36633171 - 36632771
Alignment:
| Q |
13 |
aaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcaccct |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
36633171 |
aaaattggtgatgcttcaaccgttttcaacttcatgaatgattgggccactatcaaccaaac-----aggaagatggaaaagagttattagtatcaccct |
36633077 |
T |
|
| Q |
113 |
tgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaaaag |
212 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||||||||||||||||||||| | |||| ||| || | | ||||| |||||||||||||||||||||||| |
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|
| T |
36633076 |
taagtttacttgatgcaggagcaataatttttccacaaagggatttgcctgttttcccagagattgcgggaaagagagaaaacaatgtcgtatttaaaag |
36632977 |
T |
|
| Q |
213 |
gtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgcatggatt |
312 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
36632976 |
gtttttttttcaacctgcaatgatcaaatctcttaaggcaatggtaacttctagtttcatgcattctcccacacatgtacaagttgtaactgcatggatt |
36632877 |
T |
|
| Q |
313 |
tacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgtctgaac |
412 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| ||||| |||| ||||| ||| ||||| | | ||||||||||||||||||||| ||| |
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|
| T |
36632876 |
tacaagcatacagtttcaataatggggttaaatttccaaacggcgtcgttttgcatggctgtaaatcttagaaaaagaatggatcctccattgtcggaaa |
36632777 |
T |
|
| Q |
413 |
aatgtg |
418 |
Q |
| |
|
|||||| |
|
|
| T |
36632776 |
aatgtg |
36632771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 36622367 - 36621970
Alignment:
| Q |
13 |
aaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcaccct |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| | || |||||| ||||||| |||||| |
|
|
| T |
36622367 |
aaaattggtgatgctgcaaccattttcaacttcatgaatgattgggccattatctaccaaaagtttgatgaagatgaaaaagatttatta---------- |
36622278 |
T |
|
| Q |
113 |
tgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaaaag |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| ||| |||||| |||||||||||| | |||||||| |
|
|
| T |
36622277 |
--agtttacttgatgcaggggggacaatttttccacaaagggatttacctattttcccagaaaatgtgttaaagagagaaaacaatgttgagtttaaaag |
36622180 |
T |
|
| Q |
213 |
gtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgcatggatt |
312 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||| || || |||||||||| |||||||||| |
|
|
| T |
36622179 |
gtttgtttttcaacctgcgatgatcaagtctcttaaggcaatggtaacttctagttccatgccttctcccacacgcgtgcaagttgtaattgcatggatt |
36622080 |
T |
|
| Q |
313 |
tacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgtctgaac |
412 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |||| |||| |||| |||| || | |||||||| |||||| ||||||||| |
|
|
| T |
36622079 |
tacaagcatgctgtatcaataatggggttaaatttccagacggcttcgttttacatggttgtgaatctacgcaaaagaatggttcctccgttgtctgaaa |
36621980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 34320446 - 34320864
Alignment:
| Q |
13 |
aaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaaga------gttattagtat |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||| || | ||||| || |||| ||||||||||| |
|
|
| T |
34320446 |
aaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaattacaagaagaagaagaagataaagggttattagtat |
34320545 |
T |
|
| Q |
107 |
cacccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatt |
206 |
Q |
| |
|
||| || ||||||||||| ||| || | ||||||||||||||||||| |||| |||| |||| | ||| ||| || | |||||||||| || | |
|
|
| T |
34320546 |
taccttttcctttacttgatggaggagcttctgtttttccacaaagggatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtg |
34320645 |
T |
|
| Q |
207 |
taaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattc---tcccacgcgagtacaagttgtaact |
303 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| ||||||||||||| ||||||||||| |||||||| ||| | || ||||||| |||||| |
|
|
| T |
34320646 |
taaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatggcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaact |
34320745 |
T |
|
| Q |
304 |
gcatggatttacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccat |
403 |
Q |
| |
|
||||||||||| |||| ||| |||||| ||||||| ||||||||||||||||| | ||||||||| ||| |||||||| | |||||||| |||| ||| |
|
|
| T |
34320746 |
gcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgcat |
34320845 |
T |
|
| Q |
404 |
tgtctgaacaatgtgtagg |
422 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
34320846 |
tgtctgaaaagtgtgtagg |
34320864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 422
Target Start/End: Original strand, 34329439 - 34329772
Alignment:
| Q |
89 |
aaaaagagttattagtatcacccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaa |
188 |
Q |
| |
|
|||||| |||||||| || |||||| ||| ||||||| ||| || |||| ||||||||||| ||||| ||||| || | |||| | || | |||| |
|
|
| T |
34329439 |
aaaaagggttattagaattaccctttcatttccttgatggaggagcttcaatgtttccacaaagagatttacctatttttcaagaacttgttcttaagag |
34329538 |
T |
|
| Q |
189 |
agaaaacaatgtcgtatttaaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcga |
288 |
Q |
| |
|
|||||||||||| || | |||||| ||||| |||||||| ||||||| ||||| |||||| ||||| ||||||||||| ||||||||||||| || |
|
|
| T |
34329539 |
agaaaacaatgtggtgtgtaaaagatttgtgtttcaaccctcaatgatcaagtcccttaagaaaatggcaacttctagttcggtgcattctcccacacgt |
34329638 |
T |
|
| Q |
289 |
gtacaagttgtaactgcatggatttacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaa |
388 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||| ||| ||||||||| |||| || ||||||| ||| ||| ||| |||| | || |
|
|
| T |
34329639 |
gtacaagttgtgactgcatggatttacaaatgcacggtttcaataacgggattaaatttcaagacatcattgtttagtatggctgttgattttcgcaaaa |
34329738 |
T |
|
| Q |
389 |
gaatggatcctccattgtctgaacaatgtgtagg |
422 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||| |
|
|
| T |
34329739 |
gaatggttcctccgttgtctgaaaaatgtgtagg |
34329772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 34329354 - 34329410
Alignment:
| Q |
13 |
aaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaac |
69 |
Q |
| |
|
||||||||||||| ||| || ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
34329354 |
aaaattggtgatggttcgacacttttcaacttcatgaatgattggtccattatcaac |
34329410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 410
Target Start/End: Original strand, 34333826 - 34333860
Alignment:
| Q |
376 |
gatcttcgtagaagaatggatcctccattgtctga |
410 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34333826 |
gatcttcgtagaagaatggttcctccattgtctga |
34333860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 348
Target Start/End: Complemental strand, 45306796 - 45306655
Alignment:
| Q |
207 |
taaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgca |
306 |
Q |
| |
|
||||||||||| |||||||| | |||||||| | || || | |||||| ||||| |||| ||| |||||||||| || |||| ||||||||||||| |
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|
| T |
45306796 |
taaaaggtttgaatttcaaccctcgatgattaaattcctcaaagaaatggtaacttcaagttttatgtattctcccacacgcgtactagttgtaactgca |
45306697 |
T |
|
| Q |
307 |
tggatttacaagcatgccgtttcaataatggggttaaatttc |
348 |
Q |
| |
|
||||| |||||||||| |||||| ||| || ||||||||| |
|
|
| T |
45306696 |
tggatgcacaagcatgcggtttcagcaattggattaaatttc |
45306655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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