View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20346_high_10 (Length: 302)
Name: NF20346_high_10
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1361862 - 1362146
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1361862 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
1361961 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1361962 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
1362061 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttctgttatt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1362062 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttctgttatt |
1362146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1354976 - 1355260
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
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|
| T |
1354976 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
1355075 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
1355076 |
ctgggttgtctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggattcgaggaaaggacgaaagaacgcggaattgtttg |
1355175 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttctgttatt |
285 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1355176 |
gaagacatgggcacctcagcttaagatcttagctcatggagcaattggtggatgtatgagtcattgtggttctggttctgttatt |
1355260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 20492647 - 20492924
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| ||||| ||||| ||||| | ||| | ||| |||||||||| |||||||||||||||| | |
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|
| T |
20492647 |
gattcaaaagaatcatcttcggttgtttacattggattcgggagcgagttaaagttaaatcaacaagatctaactgagttagctcatggaattgagcaat |
20492746 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| ||||||||||||||||||| || || ||||| ||||||||||||||||| ||||||||||| |||||||| |||||| ||||| ||||| |
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| T |
20492747 |
ctaggttacctttcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttgaagaaagaacaaaagaatatggaatcgtttg |
20492846 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttc |
278 |
Q |
| |
|
||| ||||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |
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|
| T |
20492847 |
gaaaacatgggcaccacagctaaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcaggttc |
20492924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29954512 - 29954789
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || | ||| |||||||||| || |||||||||||||||| |
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|
| T |
29954512 |
gattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaactgagttagcgcatggaattgagcttt |
29954611 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||| ||||| |
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| T |
29954612 |
ctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgtttg |
29954711 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttc |
278 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
29954712 |
gaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcaggttc |
29954789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 51369938 - 51369672
Alignment:
| Q |
4 |
tcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagctttctg |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||| | |||||||||||||| |||||||||||||| ||||||| |
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|
| T |
51369938 |
tcaaaagaatcatcttctgttgtttacattggatttggaagcgagtcaaagttagatcaacaagatttaactgagttagctcatggaattgaactttctg |
51369839 |
T |
|
| Q |
104 |
ggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttggaa |
203 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||| ||| | |||||||||| ||||||| ||||||||||| |||||||| |||||||||||||| |
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|
| T |
51369838 |
ggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaaagaacaaaagaacgtggaattgtttggaa |
51369739 |
T |
|
| Q |
204 |
gacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggt |
270 |
Q |
| |
|
|| |||| ||| ||| | ||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
51369738 |
aacctgggtaccccagatcaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggt |
51369672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 11531825 - 11532102
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||| ||| ||| | ||||| | ||| ||| |||||| ||||||||||||||||||| |
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|
| T |
11531825 |
gattcaaaagaatcgtcttctgttgtttacattggatttgggagcgagacgaaaataagtcaacaagatctaattgagttagctcatggaattgagcttt |
11531924 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||| |
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|
| T |
11531925 |
ctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaaagaacaaaagaacgtggaattgtttg |
11532024 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttc |
278 |
Q |
| |
|
||| ||||||||||| || ||||| |||||||| |||||| |||| |||||||||||||||||||||||||| ||||| |
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|
| T |
11532025 |
gaaaacatgggcaccacaacttaagatcttagcacatggatcaatcggtggatgtatgagtcactgtggttcaggttc |
11532102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 12846490 - 12846767
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| | || || ||| |||| || || ||||||||||||||||||| |
|
|
| T |
12846490 |
gattcaagagaatcatcttccgttgtttacattggatttgggagcgagttgaggttaacgcaaaaagatctaaccgaattagctcatggaattgagcttt |
12846589 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| ||||||||||||||||||| || || ||| ||||||||||||| |||||| ||||||| || || |||| |||||||| ||||||||||| |
|
|
| T |
12846590 |
ctaggttacctttcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaaccaaagaacgtggaattgtttg |
12846689 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggttctggttc |
278 |
Q |
| |
|
||| ||||||||||| |||||||| |||||| | |||||||||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
12846690 |
gaaaacatgggcaccccagcttaagatcttatcccatggagcaattggggggtgtatgagtcattgtggttcaggttc |
12846767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 14588935 - 14589204
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||| | ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
14588935 |
gattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagcttt |
14589034 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| | |||||||||||||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
14589035 |
ctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttg |
14589134 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggt |
270 |
Q |
| |
|
||| || |||| ||| ||| |||| |||||| |||||||| |||||||||| ||||||| ||| |||||| |
|
|
| T |
14589135 |
gaaaacttgggtaccccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggt |
14589204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 14622593 - 14622862
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||| | ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
14622593 |
gattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagcttt |
14622692 |
T |
|
| Q |
101 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| | |||||||||||||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
14622693 |
ctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttg |
14622792 |
T |
|
| Q |
201 |
gaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggt |
270 |
Q |
| |
|
||| || |||||||| ||| |||| |||||| |||||| | ||||| |||| ||||||| ||| |||||| |
|
|
| T |
14622793 |
gaaaacttgggcaccccagtttaagatcttaactcatgaatcaattagtggttgtatgactcattgtggt |
14622862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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