View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_high_13 (Length: 288)
Name: NF20346_high_13
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_high_13 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 42918271 - 42918030
Alignment:
| Q |
47 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
146 |
Q |
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| T |
42918271 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
42918172 |
T |
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| Q |
147 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918171 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
42918072 |
T |
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| Q |
247 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
288 |
Q |
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| T |
42918071 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
42918030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 23255161 - 23254920
Alignment:
| Q |
47 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
146 |
Q |
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| T |
23255161 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
23255062 |
T |
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| Q |
147 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255061 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
23254962 |
T |
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| Q |
247 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
288 |
Q |
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| T |
23254961 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
23254920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 53536081 - 53535840
Alignment:
| Q |
47 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53536081 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
53535982 |
T |
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| Q |
147 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53535981 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
53535882 |
T |
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| Q |
247 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
288 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53535881 |
ttcttcatatgtggaatcttgtagttgtgggtaccttttact |
53535840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 4755814 - 4755574
Alignment:
| Q |
47 |
gataattcttcataaccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755814 |
gataattcttcataaccattcagtagcatattctaaca-tgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactatt |
4755716 |
T |
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| Q |
147 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755715 |
cttttccacctattgatctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttct |
4755616 |
T |
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| Q |
247 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
288 |
Q |
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| T |
4755615 |
tttttcatatgtggaatcttgtagttgtgggtaccttttact |
4755574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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