View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_high_16 (Length: 275)
Name: NF20346_high_16
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6850493 - 6850769
Alignment:
| Q |
1 |
atccacccaccacccctatgtctcatctacaccaagactaaaaatctttaagactcttcatt--ggcactcaaaactcttggtttcatgtgtaagcattt |
98 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6850493 |
atccacccaccaccccaatgtctcatctacaccgagactaaaaatctttaagactcttcattttggcactcaaaactcttggtttcatgtgtaagcattt |
6850592 |
T |
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| Q |
99 |
catgaaactcttgtatttattactttttcatatatttgacttgcattttcttgaaaacagaaaagagtatttactttatggtttaacttaactaaattga |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6850593 |
catgaaactcttgtatttattactttttcatatatttgacttgcattttcttgaaaacagaaaagagtatttactctatggtttaacttaactaaattga |
6850692 |
T |
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| Q |
199 |
gtatttatcactttgaggataaccttattcattttgtcttttgttaagagggatgggagtcgggtggcccacgaact |
275 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6850693 |
gtatttaccactttgaggataaccttattcattttgtcttttgttaagagggatgggagtcgggtggcccacgaact |
6850769 |
T |
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