View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20346_high_18 (Length: 243)

Name: NF20346_high_18
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20346_high_18
NF20346_high_18
[»] chr6 (4 HSPs)
chr6 (99-233)||(8269632-8269766)
chr6 (100-233)||(795307-795440)
chr6 (100-233)||(800062-800195)
chr6 (100-233)||(8274348-8274481)
[»] chr5 (2 HSPs)
chr5 (100-233)||(19940577-19940710)
chr5 (100-233)||(19945331-19945464)
[»] chr7 (2 HSPs)
chr7 (100-233)||(6688641-6688774)
chr7 (100-233)||(6693381-6693514)
[»] chr8 (1 HSPs)
chr8 (100-233)||(26199352-26199484)
[»] chr4 (7 HSPs)
chr4 (1-94)||(3957804-3957897)
chr4 (35-91)||(3935711-3935767)
chr4 (32-92)||(4022830-4022890)
chr4 (37-91)||(3815439-3815493)
chr4 (32-90)||(3922352-3922410)
chr4 (32-91)||(4007672-4007731)
chr4 (32-92)||(3984754-3984814)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 8269632 - 8269766
Alignment:
Q  99 ctgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatta 198  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8269632 ctgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatta 8269731  T
Q  199 taggttgcatttttctttcaaatagtaagcctatg 233  Q
    |||||||||||||||||||||||||||||||||||    
T  8269732 taggttgcatttttctttcaaatagtaagcctatg 8269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 795440 - 795307
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  795440 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 795341  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  795340 aggttgcatttttctttcaaatagtaagcctatg 795307  T

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Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 800195 - 800062
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  800195 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 800096  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  800095 aggttgcatttttctttcaaatagtaagcctatg 800062  T

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Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 8274348 - 8274481
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8274348 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 8274447  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  8274448 aggttgcatttttctttcaaatagtaagcctatg 8274481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 19940577 - 19940710
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19940577 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 19940676  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  19940677 aggttgcatttttctttcaaatagtaagcctatg 19940710  T

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Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 19945331 - 19945464
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19945331 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 19945430  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  19945431 aggttgcatttttctttcaaatagtaagcctatg 19945464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 6688641 - 6688774
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6688641 tgttggtgaacattgtttaaggacccacatgcacgtgggataaccagccaaagcaatttactgaagcaaattgtcacacaaagtctcatgcatttattat 6688740  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  6688741 aggttgcatttttctttcaaatagtaagcctatg 6688774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 6693381 - 6693514
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  6693381 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaaacaatttgttgaaacaaattgtcacacaaagtctcatgcatttattat 6693480  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  6693481 aggttgcatttttctttcaaatagtaagcctatg 6693514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 26199352 - 26199484
Alignment:
Q  100 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 199  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26199352 tgttggtgaacattgtgtaaggacccacatgcacgtgg-ataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatatattat 26199450  T
Q  200 aggttgcatttttctttcaaatagtaagcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  26199451 aggttgcatttttctttcaaatagtaagcctatg 26199484  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3957897 - 3957804
Alignment:
Q  1 cctctggtctctctctatcaatgccaggtggtgtccttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggtagcg 94  Q
    ||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  3957897 cctctggtctctctctatcaaagccgggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcg 3957804  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 3935767 - 3935711
Alignment:
Q  35 ccttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggta 91  Q
    |||||||||||||||||||||||  |||||||  ||||||||||| |||||||||||    
T  3935767 ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3935711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 4022830 - 4022890
Alignment:
Q  32 tgtccttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggtag 92  Q
    ||||||||| |||||||||||||||| |||| |||  || |||||||||||||||||||||    
T  4022830 tgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctagttaggtag 4022890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 3815439 - 3815493
Alignment:
Q  37 ttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggta 91  Q
    |||||||||||||||||||||  |||||||  ||||||||||| |||||||||||    
T  3815439 ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3815493  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 3922410 - 3922352
Alignment:
Q  32 tgtccttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggt 90  Q
    ||||| ||||||||||||||||||||  |||||||  ||||||||||| ||||||||||    
T  3922410 tgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggt 3922352  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 4007672 - 4007731
Alignment:
Q  32 tgtccttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggta 91  Q
    |||||||||||||||||||||||||| |||||| |  || |||||||  |||||||||||    
T  4007672 tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggta 4007731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 3984754 - 3984814
Alignment:
Q  32 tgtccttgctgtaaccttgattttaatccttgtctacttttttgctatgctagttaggtag 92  Q
    |||||||||||||||||||||||||| |  |||||   |||| |||||||| |||||||||    
T  3984754 tgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtag 3984814  T

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