View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_high_19 (Length: 230)
Name: NF20346_high_19
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 42917840 - 42918033
Alignment:
| Q |
19 |
caaactctcctgatttaaatgttttagatcttggtttctttaggtcagttcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917840 |
caaactctcctgatttaaatgttttagatcttggtttctttaggtcaattcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
42917939 |
T |
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| Q |
119 |
tgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917940 |
tgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
42918033 |
T |
|
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Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 23254730 - 23254923
Alignment:
| Q |
19 |
caaactctcctgatttaaatgttttagatcttggtttctttaggtcagttcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23254730 |
caaactctcctgatttaaatgtttaagatcttggtttctttaggtcaattcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
23254829 |
T |
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| Q |
119 |
tgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23254830 |
tgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
23254923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 53535650 - 53535843
Alignment:
| Q |
19 |
caaactctcctgatttaaatgttttagatcttggtttctttaggtcagttcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53535650 |
caaactctcctgatttaaatgtttaagatcttggtttctttaggtcaattcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
53535749 |
T |
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| Q |
119 |
tgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53535750 |
tgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
53535843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 4755384 - 4755577
Alignment:
| Q |
19 |
caaactctcctgatttaaatgttttagatcttggtttctttaggtcagttcaagccttacaacacaagaagtctcctaactctgttgatgatcttgtgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4755384 |
caaactctcctgatttaaatgttttagatcttggtttctttaggtcaattcaagccttacaacacaagaagtctcctaactctgttgatgatattgtgga |
4755483 |
T |
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| Q |
119 |
tgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755484 |
tgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatatttttatcacttcaatcatgtatgattgaaatcatgaaagta |
4755577 |
T |
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