View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20346_high_5 (Length: 440)
Name: NF20346_high_5
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 11875093 - 11875495
Alignment:
| Q |
20 |
caattctacaccccaaactcaattttacctcctctaaaaatggaatgaaacatacactaaatttaattcctatttttagatcatg--caaattcaaaatt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||| ||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
11875093 |
caattctacaccacaaactcaattttacctc-tctaaaaacggaatgaaacatacaataaattgaatcactatttt-agatcatgtgcaaattcaaaatt |
11875190 |
T |
|
| Q |
118 |
tagatatgctctatctacttctttactaaggttgatgaccacatataagaaacatgaaaatggaaaaagaaaagataaatttgaactt----accaagat |
213 |
Q |
| |
|
|||||| | | | ||||||| || || || |||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
11875191 |
cagatatattttgtgtacttctctagaaa------------cacataagaaacatgaaaatgacaaaagacaagataaatttgaactttcttaccaagat |
11875278 |
T |
|
| Q |
214 |
atctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaagaccaggcaaa |
313 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
11875279 |
atctagtttaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgttggaaaacaacaagaccaggcaaa |
11875378 |
T |
|
| Q |
314 |
gaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattgcttgcatactg |
413 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11875379 |
gaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattgattgcatactg |
11875478 |
T |
|
| Q |
414 |
caaatcctattcctttg |
430 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11875479 |
caaatcctattcctttg |
11875495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 11868783 - 11869031
Alignment:
| Q |
182 |
aaaagaaaagataaatttgaacttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacat |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
11868783 |
aaaagcaaagataaatttgaacttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatactcgcagcatctatgacat |
11868882 |
T |
|
| Q |
282 |
caagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11868883 |
caagttgatgaaaaacaacaagaccaggcagagaaagatgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagt |
11868982 |
T |
|
| Q |
382 |
gatccctttagaagccaattgcttgcatactgcaaatcctattcctttg |
430 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11868983 |
gatccctttagaagccaattgattgcatactgcaaatcctattcctttg |
11869031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 203 - 430
Target Start/End: Original strand, 11878877 - 11879104
Alignment:
| Q |
203 |
cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
302 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878877 |
cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
11878976 |
T |
|
| Q |
303 |
gaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
402 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878977 |
gaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
11879076 |
T |
|
| Q |
403 |
cttgcatactgcaaatcctattcctttg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11879077 |
cttgcatactgcaaatcctattcctttg |
11879104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 203 - 430
Target Start/End: Original strand, 11893884 - 11894111
Alignment:
| Q |
203 |
cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
302 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11893884 |
cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
11893983 |
T |
|
| Q |
303 |
gaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
402 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11893984 |
gaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
11894083 |
T |
|
| Q |
403 |
cttgcatactgcaaatcctattcctttg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11894084 |
cttgcatactgcaaatcctattcctttg |
11894111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 203 - 430
Target Start/End: Original strand, 11896293 - 11896520
Alignment:
| Q |
203 |
cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
302 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896293 |
cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
11896392 |
T |
|
| Q |
303 |
gaccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
402 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896393 |
gaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
11896492 |
T |
|
| Q |
403 |
cttgcatactgcaaatcctattcctttg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11896493 |
cttgcatactgcaaatcctattcctttg |
11896520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 205 - 426
Target Start/End: Complemental strand, 25859186 - 25858965
Alignment:
| Q |
205 |
taccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaaga |
304 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||| |||||| |||| |||| ||||||| | |||||||||||||||||||||| ||||| ||| | |
|
|
| T |
25859186 |
taccaagatatcaagtttaccaaattgatttttgaggaaatctgcaaaagatccaatacttgtaggatctatgacatcaagttgatggaaaaccacatgg |
25859087 |
T |
|
| Q |
305 |
ccaggcaaagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattgct |
404 |
Q |
| |
|
||||| | | ||| | |||| || ||||||||||||||||||||||| ||||||||||| | |||||||| |||| || |||||| ||||||||| |
|
|
| T |
25859086 |
ccaggaagtgcaagatccttcaatttatcaacagcttcaagacctctcttctcatctcttgctgccagcaccactttgataccattagaaaccaattgct |
25858987 |
T |
|
| Q |
405 |
tgcatactgcaaatcctattcc |
426 |
Q |
| |
|
|||||| ||||||||| ||||| |
|
|
| T |
25858986 |
tgcatattgcaaatccaattcc |
25858965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University