View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20346_low_10 (Length: 338)
Name: NF20346_low_10
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 15921210 - 15921494
Alignment:
| Q |
22 |
tcgaagaacatggccaaatggaaacacagtttgaaggaggtgaacataattcgatgcggaaaaa-tacaaatcaagaccaagaagacagggataaggaag |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
15921210 |
tcgaaggacatggccaaatggaaacacagttggaaggaggtgaacatagttcaatgcggaaaaaatacaactcaagaccaagaagacagtgatgaggaag |
15921309 |
T |
|
| Q |
121 |
aaattaattcgaattggaatacttataagagcatacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaa |
220 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15921310 |
atattaattttaattggaatacttataagagcatacgggatctaaaaacagtaggaattcgagtggtagcaaataagacagatgagtggaactggagtaa |
15921409 |
T |
|
| Q |
221 |
catttcgttcaagtctaaatggtttagtggagaactaagacttcctannnnnnngttcaatgatgtcacaccttattttcttcga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||| ||||||||||||||| ||||| |
|
|
| T |
15921410 |
catttcgttcaagtctaaatggtttagtggagaattaaggcttcctatgtttttgtttaatgacgtcacaccttatttttttcga |
15921494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 15873889 - 15873603
Alignment:
| Q |
19 |
acatcgaagaacatggccaaatggaaacacagtttgaaggaggtgaacataattcgatgcggaaaaatacaaatcaagaccaagaagacagggataagga |
118 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| | ||||||| ||||||| ||||||||| ||||||||| || ||||||||||||||| | ||| |||| |
|
|
| T |
15873889 |
acattgaagaacatggtaaaatggaaacacaatctgaaggaagtgaacacaattcgatgaggaaaaataaaactcaagaccaagaagatattgatgagga |
15873790 |
T |
|
| Q |
119 |
agaaattaattcgaattggaatacttataagagcatacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagt |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15873789 |
agaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcaagtggtagcaaataagacagatgagtggaactggagt |
15873690 |
T |
|
| Q |
219 |
aacatttcgttcaagtctaaatggtttagtggagaactaagacttcctannnnnnngttcaatgatgtcacaccttattttcttcga |
305 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
15873689 |
aacatttcgttcacgtctaaatggtttaatggagaactaaggcttcctatttttttgttcaatgacgtcacaccttatttttttcga |
15873603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 81 - 267
Target Start/End: Original strand, 15900220 - 15900406
Alignment:
| Q |
81 |
aaaaatacaaatcaagaccaagaagacagggataaggaagaaattaattcgaattggaatacttataagagcatacgggatctaaagacagcaggaattc |
180 |
Q |
| |
|
||||||||||| ||||||||| |||| || |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
15900220 |
aaaaatacaaagcaagaccaaaaagatagtgataagccagaaattgatttcaattggaatacttataagagcatacgggatctaaaaacagtaggaattc |
15900319 |
T |
|
| Q |
181 |
gagtggtagcaaataagacggatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttccta |
267 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
15900320 |
aagtggtagcaaataagacagataagtggacctggagtaacatttctttcaagtctaaatggtttagtggcgaactaaggcttccta |
15900406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 305
Target Start/End: Complemental strand, 14060189 - 14060016
Alignment:
| Q |
132 |
aattggaatacttataagagcatacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaacatttcgttca |
231 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| | | ||||||||||||| | |||||||||| |||| |||| ||||||||| |||| |||| |
|
|
| T |
14060189 |
aattggaatacttataaaagcataagggatctaaaaataataggaattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttctttca |
14060090 |
T |
|
| Q |
232 |
agtctaaatggtttagtggagaactaagacttcctannnnnnngttcaatgatgtcacaccttattttcttcga |
305 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
14060089 |
agtctaagtggttgagtggagaactaagacttcctatttttttgttcaatgatgtcacaccttatttttttcga |
14060016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 305
Target Start/End: Complemental strand, 14048815 - 14048645
Alignment:
| Q |
135 |
tggaatacttataagagcatacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaacatttcgttcaagt |
234 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| | | ||||||||||||| | |||||||||| |||| |||| ||||||||| |||| ||||||| |
|
|
| T |
14048815 |
tggaatacttataaaagcataagggatctaaaaatggtaggaattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttccttcaagt |
14048716 |
T |
|
| Q |
235 |
ctaaatggtttagtggagaactaagacttcctannnnnnngttcaatgatgtcacaccttattttcttcga |
305 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
14048715 |
ctaagtggttgagtggagaactacgacttcctatttttttgttcaatgatgtcacgccttatttttttcga |
14048645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 15880511 - 15880450
Alignment:
| Q |
206 |
gtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttccta |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
15880511 |
gtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttccta |
15880450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University