View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_13 (Length: 291)
Name: NF20346_low_13
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 23313573 - 23313455
Alignment:
| Q |
25 |
aaattatgtgtcccttttgagtttacaccatgattagtagtgttatttttaatggtacaatgtgcttcatttactaacacattgtag---ttatagttag |
121 |
Q |
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| T |
23313573 |
aaattaggtgtcccttttgagtttacaccatgattagtagtgttatttttaatggtacaatgtgcttcatttactaacacattgtagttattatagttag |
23313474 |
T |
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| Q |
122 |
tggagtagttaggagattg |
140 |
Q |
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| T |
23313473 |
tggagtagttaggagattg |
23313455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 23313387 - 23313317
Alignment:
| Q |
211 |
gggacaaataatttgagacaaagaaaaatagtcaagagacaccaatttgagacggagggagtataatctac |
281 |
Q |
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| T |
23313387 |
gggacaaataatttgacacaaagaaaaatagtcaagagacaccaatttgagacggagggagtattatctac |
23313317 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 7930010 - 7929945
Alignment:
| Q |
211 |
gggacaaataatttgagacaaagaaaaatagtcaaga-gacacc-aatttgagacggagggagtat |
274 |
Q |
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| T |
7930010 |
gggacaaataaattgagacaaagaaaaatagtaaagaggacacctattttgagacggagggagtat |
7929945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 33537514 - 33537452
Alignment:
| Q |
213 |
gacaaataatttgagacaaagaaaaatagtcaa-gagacacc-aatttgagacggagggagta |
273 |
Q |
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| T |
33537514 |
gacaaataatttgagacaaagaaaaatagtaaaggaaacacctattttgagacggagggagta |
33537452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 31295509 - 31295447
Alignment:
| Q |
213 |
gacaaataatttgagacaaagaaaaatagtcaagag-acacc-aatttgagacggagggagta |
273 |
Q |
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|||||||||||||||||||| |||||| || ||||| ||||| ||||||||| |||||||||| |
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| T |
31295509 |
gacaaataatttgagacaaaaaaaaatggtaaagagaacacctaatttgagatggagggagta |
31295447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 8740928 - 8740892
Alignment:
| Q |
211 |
gggacaaataatttgagacaaagaaaaatagtcaaga |
247 |
Q |
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|||||||||||||| ||||||||||||||||| |||| |
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| T |
8740928 |
gggacaaataattttagacaaagaaaaatagtaaaga |
8740892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 9220735 - 9220703
Alignment:
| Q |
216 |
aaataatttgagacaaagaaaaatagtcaagag |
248 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
9220735 |
aaataatttgagacaaagaaaaatagtaaagag |
9220703 |
T |
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