View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20346_low_2 (Length: 668)

Name: NF20346_low_2
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20346_low_2
NF20346_low_2
[»] chr5 (1 HSPs)
chr5 (19-657)||(40775749-40776382)


Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 657
Target Start/End: Complemental strand, 40776382 - 40775749
Alignment:
Q  19 tcatggactagatttttctgtttgttgctagagatagagaaagtgcatagctttttccatgtgtgttaggttgccactcattcctcatcaaatttcaaa- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40776382 tcatggactagatttttctgtttgttgctagagatagagaaagtgcatagctttttccatgtgtgttaggttgccactcattcctcatcaaatttcaaaa 40776283  T
Q  118 ggggaaatggacaagctagttcaactcaacgagattttacgtccacaaaaaattcatataattttcacgaaaaacaattatattgttgtgaaagatagga 217  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40776282 ggggaaatggacaagctagttcaacgcaacgagatttcaagtccacaaaaaattcatataattttaacgaaaaataattatattgttgtgaaagatagga 40776183  T
Q  218 tttacgtgtatttattttaacgcatcannnnnnncttcttgtgcaagtttaacgtatcatcggggatcggtaagaaaaaatagttgcggaaataaaagtc 317  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40776182 tttacgtgtatttattttaacgcatcatttttttcttcttgtgcaagtttaacgtatcatcggggatcggtaagaaaaaatagttgcggaaataaaagtc 40776083  T
Q  318 ctcgaaaatgctatgtactatcccaatag--------atatgtgtcattcactcttatcaaaaaagtttcattttaccaacttcacgtctca--nnnnnn 407  Q
    |||||||||||||||||||||||||||||        ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||            
T  40776082 ctcgaaaatgctatgtactatcccaatagtagaggatataagtgtcattcactcttaacaaaaaagtttcattttaccaacttcacgtctcatttatttt 40775983  T
Q  408 nnnnngttgctcattcaactccacggatcgtatgtgagaatattgtacatcgagctcattcagttcctttcaacttaggtgtgattgaattttctttttc 507  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  40775982 tttttgttgctcattcaactccacggatcgtatgtgagaatattgtacatcgagctcattcagttcctttcaacttaggtgtgattgaa------ttttc 40775889  T
Q  508 ttttattcaacattctaatttgtaaatgattttgatgtaacttttggcgcaatgatatatatttaggttttagtcagtaaaaaacatgtcatattacata 607  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40775888 ttttattcaacattctaatttgtaaatgattctgatgtaacttttggcgcaatgatatatatttaggttttagtccgtaaaaaacatgtcatattacata 40775789  T
Q  608 tttaaatacacttatgagttatgtgaaatatgtctaaacttgtgagtatt 657  Q
    |          |||||||||||||||||||| ||||||||||||||||||    
T  40775788 t----------ttatgagttatgtgaaatatatctaaacttgtgagtatt 40775749  T

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