View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_20 (Length: 250)
Name: NF20346_low_20
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 8777466 - 8777653
Alignment:
| Q |
63 |
ttagagaaaacattgatatgttcgattggactgcaacatccatgcatggaattaacctcaatatagtatgtaccaaatggcaatcaaccctaatgcaaaa |
162 |
Q |
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| T |
8777466 |
ttagataaaacattgatatgttcgattggactgcaacatccatgcatggaattaacctcaatatagcatgtaccaaatggcaatcaaccctaatgcaaaa |
8777565 |
T |
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| Q |
163 |
acagtggctcagcgccgtaagaagaagtctcccaaaaagggaggctgcagaaaaagttggaaaaaacctcctacaagaaaattgtatt |
250 |
Q |
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| T |
8777566 |
acagtggctcagcgccgtaagaagaagtctcccaaaaagggaggctgcagaaaaagttggaaaaaacctcctacaagaaaattgtatt |
8777653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 8762800 - 8762855
Alignment:
| Q |
12 |
atgaacatggatgccaaaactggtaattaagggcgcggttcaatgcatgcattaga |
67 |
Q |
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| T |
8762800 |
atgaacatggatgccaaaactggtaattaagggcgcagttcaatgcatgcattaga |
8762855 |
T |
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