View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_23 (Length: 214)
Name: NF20346_low_23
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 29196374 - 29196195
Alignment:
| Q |
20 |
ggttatgtaattgaccgattgatttcccaaggaatttctaaaggtgctcaaaggattgaacttcttttatcatacaaatcttcagataattattcaattg |
119 |
Q |
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| T |
29196374 |
ggttatgtaattgaccgattgatttcccaaggaatttctaaaggtgctcaaaggattgaacttcttttatcatacaaatcttcagataattattcaattg |
29196275 |
T |
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| Q |
120 |
agccatacacattttccttatcagagaatgattgtttgaaatatctacacctgcaaaactgtcttctatcaccacctatg |
199 |
Q |
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| T |
29196274 |
agccatacacattttccttatcagagaatgattgtttgaaatatctacacctgcaaaactgtcttctatcaccacctatg |
29196195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 29204185 - 29204260
Alignment:
| Q |
124 |
atacacattttccttatcagagaatgattgtttgaaatatctacacctgcaaaactgtcttctatcaccacctatg |
199 |
Q |
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| T |
29204185 |
atacaaattttcctgatctgagaatgattgttcgaagcatctacacctacaaaattgtcttatatcaccacctatg |
29204260 |
T |
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