View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_3 (Length: 620)
Name: NF20346_low_3
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_3 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 13 - 605
Target Start/End: Complemental strand, 3426 - 2825
Alignment:
| Q |
13 |
aaggagagtcaccaactgaccaagttctagttcaacaagagagtgacatgacaacatttgatgctgatggaaagaatcatatgcttgaatcacaacaaga |
112 |
Q |
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| T |
3426 |
aaggagagtcaccaactgaccaagttctagttcaacaagagagtgacatgacaacatttgatgctgatggaaagaatcatatgcttgaatcacaacaaga |
3327 |
T |
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| Q |
113 |
catgatggtgttttcatgcttggaccaacaaggtatggttggtgagtttccaatggattttcaattagaaggatttgaagctatggtaagtggaggagag |
212 |
Q |
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| T |
3326 |
catgatggtgtattcatgcttggaccaacaaggtatggttggtgagtttccaatggattttcaattagaaggatttgaagctatggtaagtggaggagag |
3227 |
T |
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| Q |
213 |
ggtagtagtagccaatggaattgggaggatttgctcttagatatggatctatataatggtttttcttagattattgttccttattgccaatagggaagac |
312 |
Q |
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| T |
3226 |
ggtagtagtagccaatggaattgggaggatttgctcttagatatggatctatataatggtttttcttagattattgttccttattgccaatagggaagac |
3127 |
T |
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| Q |
313 |
aatgtagtctctatacatgggttgtgtgtcaatttcaaagttaaatgttatccaaggaaatggtggcttaatcgatgtattttgtaaatcgaagtagttg |
412 |
Q |
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| T |
3126 |
aatgtagtctctatacattggttgtgtgtcaatttcaaagttaaattttatccaaggaaatggtggcttaatcgatgtattttgtaaatcgaagtagttg |
3027 |
T |
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| Q |
413 |
ttgtttaaataaaccaataaagtcggtcttgtgagacatagttagccctaaaactggttagtaatatggaaatagttttgtagctttttaaaccctatta |
512 |
Q |
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| T |
3026 |
ttgtttaaataaaccaataaaatcggtcttgtgagacagagttagccctaaaactggttagtaatatggaaatagttttgtagttttttaaaccctatta |
2927 |
T |
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| Q |
513 |
c-tatatatctagtagac-------gatttg-nnnnnnnnaatagtatcctagttgataataaaaaggaatatcctcctacataagagaggcagataaat |
603 |
Q |
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| T |
2926 |
cttttatatctagtagacaatgtaagatttgtttttttttaatagtatcctagttgataatgaaaaggaatatcctcttacataagagaggcagataaat |
2827 |
T |
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| Q |
604 |
at |
605 |
Q |
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|| |
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| T |
2826 |
at |
2825 |
T |
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