View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_4 (Length: 492)
Name: NF20346_low_4
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 41 - 420
Target Start/End: Complemental strand, 29445584 - 29445207
Alignment:
| Q |
41 |
tttgatttatctaccaaataaataaaagatgtcgggttaaaacttaaaaacattgagaggtctaaaccttttgaccggaaataaaagttcagtaaaaaag |
140 |
Q |
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| T |
29445584 |
tttgatttatctaccaaataaacaa--gatgtcgggttaaaacttaaaaacattgagaggtctgaaccttttgaccggaaataaaagttcagtaaaaaat |
29445487 |
T |
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| Q |
141 |
ctgaaaataaatgctcaacccgattctgtttataattaattctatcagaaagtaaaggattaaaaaatttgctgctttcctttgtaaataaataaataaa |
240 |
Q |
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| T |
29445486 |
ctgaaaataaatgctcaacccgattctatttataattaattctatcagaaagtaaaggattaaaaaatttgctgctttcctttgtaaataaataaataaa |
29445387 |
T |
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| Q |
241 |
tttgttagcatcttacattttcttccactcaattgattttccttcctaactacagtcaattgtggaatatcaacactgctgggtgcttcagaaccacctc |
340 |
Q |
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| T |
29445386 |
tttgttagcatcttacattttcttccactcaattgattttccttcctaactacagtcaattgtggaatatcaacactgctgggtgcttcagaaccacctc |
29445287 |
T |
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| Q |
341 |
ttgaggacaccaacactgcattagacttcttactttggtttctggctttctgctgcgttattcagcatgaatcagccatc |
420 |
Q |
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| T |
29445286 |
ttgaggacaccaacactgcattagacttcttactttggtttctggctttctgctgcgttattcagcatgaatcagccatc |
29445207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 203 - 420
Target Start/End: Original strand, 29421217 - 29421424
Alignment:
| Q |
203 |
aaaaatttgct-gctttcctttgtaaataaa-taaataaatttgttagcatcttacattttcttccactcaattgattttccttcctaactacagtcaat |
300 |
Q |
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| T |
29421217 |
aaaaatttgctagctttcctttgtaaacaaaataaataaatttgtttgtctcttacattttcttccactcaagtgattttccttcctaactacagtcaat |
29421316 |
T |
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| Q |
301 |
tgtggaatatcaacactgctgggtgcttcagaaccacctcttgaggacaccaacactgcattagacttcttactttggtttctggctttctgctgcgtta |
400 |
Q |
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|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
29421317 |
tgtggaatat------------gtgctttagaactacctcttgaggacaccaacactgcattagacttctttctttggtttttagttttctgctgcgttg |
29421404 |
T |
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| Q |
401 |
ttcagcatgaatcagccatc |
420 |
Q |
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| T |
29421405 |
ttcagcatgaatgagccatc |
29421424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 29445189 - 29445126
Alignment:
| Q |
412 |
tcagccatccacaatgactatgctacacaaattcacataaagaaccgaattgattcctgattaa |
475 |
Q |
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| T |
29445189 |
tcagtcatccacaatgactatgctacataaattcacataaagaaccgaattgattcctgattaa |
29445126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 29421511 - 29421566
Alignment:
| Q |
422 |
acaatgactatgctacaca--aattcacataaagaaccgaattgattcctgattaa |
475 |
Q |
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| T |
29421511 |
acaatgactatgctatacacgaattcacataaagaaccaaattgattcctgattaa |
29421566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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