View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_8 (Length: 413)
Name: NF20346_low_8
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 3958111 - 3958502
Alignment:
| Q |
1 |
cgagttattcaacattacatcatgcagctgaagatgaagaatttgatttacacacaagtctatagtttgatgtaagtagacacgcttaacattcgagtta |
100 |
Q |
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| T |
3958111 |
cgagttattcaacattacatcatgcaactgaagatgaagaatttgatttacacagaagtctatagtttgatgtaagtagacatgcttaacattcgagtta |
3958210 |
T |
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| Q |
101 |
taaaaattactttttataattacgattattatacatagacctaaataatatccattgaaatatatttgttttttgttctgcagtttcatgcagtggttgc |
200 |
Q |
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| T |
3958211 |
taaaaattactttttataattacgattattatacatagacctaaataatatccattgaaatatatttgttttttgttctgcagtttcatgcagtggttgc |
3958310 |
T |
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| Q |
201 |
ggcatttccaatatccaagtcagttaaagaagaataacataagaggattgtaaaagtagatgtatgaaactcagctcacaatgtgtaattctgtatatgc |
300 |
Q |
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| T |
3958311 |
agcatctccaatatccaagtcagttaaagaagaataacataagaggattgtaaaagtagatgtatgaaactcagctcacaatgcgtaattctgtatatgc |
3958410 |
T |
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| Q |
301 |
aactgatcgcaagtgaatggaaattaatctgttttataacaaacatatgtttcttgatttttccttcttgattaaaattaaggctataggac |
392 |
Q |
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| T |
3958411 |
aactgattgcaaatgaatggaaattaatctgttttataacaaacaaatgtttcttgatttttccttcttgattaaaattaaggctataggac |
3958502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 3998531 - 3998438
Alignment:
| Q |
29 |
tgaagatgaagaatttgatttacacacaagtctatagtttgatgtaagtagacacgcttaacattcgagttataaaaattactttttataatta |
122 |
Q |
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| T |
3998531 |
tgaagatgaagaatttgatttagacacaactctatagtatgatgcaagtagacacagttaacagttgagttaccaacattactttctatcatta |
3998438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 3958037 - 3958089
Alignment:
| Q |
27 |
gctgaagatgaagaatttgatttacacacaagtctatagtttgatgtaagtag |
79 |
Q |
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| T |
3958037 |
gctgaagatgaagaagttgatttagacacaagtccatagtttgatgtaagtag |
3958089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 4022678 - 4022623
Alignment:
| Q |
28 |
ctgaagatgaagaatttgatttacacacaagtctatagtttgatgtaagtagacac |
83 |
Q |
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| T |
4022678 |
ctgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagacac |
4022623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 4007032 - 4006977
Alignment:
| Q |
314 |
tgaatggaaattaatct-gttttataacaaacatatgtttcttgatttttccttct |
368 |
Q |
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| T |
4007032 |
tgaatggaaattaatcttgtgttataacaaaaaaatatttcttgatttttccttct |
4006977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 3984560 - 3984475
Alignment:
| Q |
29 |
tgaagatgaagaatttgatttacacacaagtctatagtttgatgtaagtagacacgcttaacattcgagttataaaaattactttttat |
117 |
Q |
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| T |
3984560 |
tgaagatgaagaagttgatttaggcacaa---tgtagtctgatgtaagtaaccacgattaacattcgagttatcaacattacttcttat |
3984475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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