View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20346_low_9 (Length: 408)
Name: NF20346_low_9
Description: NF20346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20346_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 18644776 - 18644440
Alignment:
| Q |
17 |
aatatcgaaccaagcgctgcaacacacagaaaaacaaagatcattatgattcttctacgttctaacattgtgaatgaagttgatttggtagataaagttg |
116 |
Q |
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| T |
18644776 |
aatatcgaaccaagcgctgcaacacacagaaaaacaaagaccatcatgattcttctacgttctaatatggtgaacgaagttgagttggaagatgaagttg |
18644677 |
T |
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| Q |
117 |
ttgttccgttcataaggtgtgcctggacgttgttgtcaacagtgttggctaacgttcgtctgaatagagtgttggccattggatctcgtaaatttaaggt |
216 |
Q |
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| T |
18644676 |
ttgttccgttcataaggtgtgcctggacgttgttgtcaacagtgttggctaacgttcgtctgaatag--tgttggccattggatctcgtaaatttaaggt |
18644579 |
T |
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| Q |
217 |
agtaaaacacaatagtttatttgtcactccggttggagtgttgtatctaaaaacaccctaacgatgatcaagtaaaatgtgtcgaatatgtaaggtttta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18644578 |
agtaaaacacaatagtttatttgtcactccggttggagtgttgtatctaaaaacaccctaacgatgatcaagtaaaatgtgtcgaatatgtaaggtttta |
18644479 |
T |
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| Q |
317 |
ggaataaaaaagtgtgttaggaacggtgtcttgagaggt |
355 |
Q |
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| T |
18644478 |
ggaataaaaaagtgtgttaggaacggtgtcttgagaggt |
18644440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 387
Target Start/End: Complemental strand, 18644131 - 18644103
Alignment:
| Q |
359 |
cacagtcttaacaagaacaaaagtgccgc |
387 |
Q |
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| T |
18644131 |
cacagtcttaacaagaacaaaagtgccgc |
18644103 |
T |
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