View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_high_20 (Length: 287)
Name: NF20347_high_20
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 24356141 - 24356417
Alignment:
| Q |
1 |
gatgtcaatgttaaatgaaaatataaaagcactcccccttgcctatctccttcacaatccaactagtcatttcaaattaattaagttgcgttaaaattac |
100 |
Q |
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| T |
24356141 |
gatgtcaatgttaaatgaaaatataaaagcactcccccttgcctatctccttcacaatccaactagtcatttcaaattaattaagttgcgttaaaattac |
24356240 |
T |
|
| Q |
101 |
ttcatgataactattccatattcaattgcaaatttctcattgcactcattatttgacatgacaatcatgtttaggtatcttttaagttgaaaatcaaagc |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24356241 |
ttcatgataactattccatattcaattacaaatttctcattgcactcattatttgacatgacaatcatgtttaggcatcttttaagttgaaaatcaaagc |
24356340 |
T |
|
| Q |
201 |
tggaattataattattactcttagaattcaactttcagttaaccattcatatttattcatcaataactaacattcat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24356341 |
tggaattataattattactcttagaattcaactttcagttaaccattcatatttatttatcaataactaacattcat |
24356417 |
T |
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