View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_high_28 (Length: 244)
Name: NF20347_high_28
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_high_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 17392427 - 17392652
Alignment:
| Q |
19 |
ttaagcatgatgaaccgaaccaaactatctacaaactgtcggatgtttctttacgggagtttactccaagtttgttgtaaacaagttcggggattttaag |
118 |
Q |
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| T |
17392427 |
ttaagcatgatgaaccgaaccaaactatctacaaactgtcggatgtttctttacgggagtttactccaagtttgttgtaaacaagttcggggattttaag |
17392526 |
T |
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| Q |
119 |
gctaattcttgactgttaaccttgcagctcaaactatggtaaactaaaactttcttcctttccaattgacgcatataatagataaatgagggatcaatat |
218 |
Q |
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| T |
17392527 |
gctaattcttgactgttaaccttgcagctcaaactatggtaaactaaaactttcttcctttccaattgacgcatataatagataaatgagggatcaatat |
17392626 |
T |
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| Q |
219 |
aatgatcatgtagaacaataacaagc |
244 |
Q |
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||||||||||||||||||||| |||| |
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| T |
17392627 |
aatgatcatgtagaacaataataagc |
17392652 |
T |
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