View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20347_high_34 (Length: 235)
Name: NF20347_high_34
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_high_34 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0027 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 49916 - 50142
Alignment:
| Q |
1 |
atttttatttatttatttgttcatatcttttgctatattttacagtcgttctcgttgattctgataataacacaaaagaatgttaacttcaagcaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
49916 |
atttttatttatttatttgttcatattttttgctatattttacggtcgttctcgttgattctgataataacacaaaagattgttaactttaagcaaatta |
50015 |
T |
|
| Q |
101 |
tgtttgatgtagtaatattcttgatcttccttccattggttgttttaccactttcagctccaacagatgcttcatggttgcaagatgagtcactcctaca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
50016 |
tgtttgatgtagttatattcttgatcttccttccattggttcttttaccactttcagctccaacagatacttcatggtggcaagataagtcactcctaca |
50115 |
T |
|
| Q |
201 |
ccaagatatgccattttcagaattatc |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
50116 |
ccaagatatgccattttcagcattatc |
50142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University