View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_high_4 (Length: 535)
Name: NF20347_high_4
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 182 - 525
Target Start/End: Complemental strand, 9720480 - 9720137
Alignment:
| Q |
182 |
ctaaaatgtagggtaaatagaaataagaaaatggacagttttatattgtgtaaagatatggtcccctaatgttggcactacttttgattttgcagacaaa |
281 |
Q |
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| T |
9720480 |
ctaaaatgtggggtaaataaaaataagaaaatggacagatttatattgtgtaaagatatggtcccctaatgttggcactacttttgattctgcagacaaa |
9720381 |
T |
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| Q |
282 |
gatgtgtgaagggtggaagcgtgtggttccatggaagagtgaaaaagtgaagaagtatcaatgttggtggttttaggagctatagtattttacactgtca |
381 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
9720380 |
gatgtgtgaaggatggaagcgtgtggttccatggaagagtgaaaaagtgaacaagtatcagtgttggtggttttaggagctatagtattttagactgtca |
9720281 |
T |
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| Q |
382 |
ggtcaaaatcaattatgtgcatgatgaccactacatatgtaccatgttttgcctaatttgtcttttacatatcttcaccaaatcaaatgtcacaggtctc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9720280 |
ggtcaaaatcaattatgtgcatgatgaccactacatatgtaccatgttttgcctaatttgtcctttacatatcttcaccaaatcaaatgtcacaggtctc |
9720181 |
T |
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| Q |
482 |
attcaaggtctatttcttcttcagttgctacaccactgtctgtg |
525 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9720180 |
attcaaggtctatttcttcttctgttgctacaccactgtctgtg |
9720137 |
T |
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