View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_high_8 (Length: 479)
Name: NF20347_high_8
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 34084559 - 34085027
Alignment:
| Q |
17 |
acttcacagatgctttgccaaacaaaattgttattcacataattaaggagaataaaaattaaatgagacatacaattgcctaattcaataaaaggatggg |
116 |
Q |
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| T |
34084559 |
acttcacagatgctttgccaaacaaaattgttattcacataattaaggagaataaaaattaaatgagacatacaattgcctaattcaataaaaggatggg |
34084658 |
T |
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| Q |
117 |
gacattgaacatgatagtatannnnnnnnnnn-----------catatcgtgattgctcaaa-tgtgaatgaatgtgattagatttgtatatagtaatcg |
204 |
Q |
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| T |
34084659 |
gacattgaacatgatagtatatatatatatattttttttttttcatatcgtgattgctcaaaatgtgaatgaatgtgattagatttgtatatagtaatcg |
34084758 |
T |
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| Q |
205 |
taatgaatacatataatccaaataagtatcaaaccattatagatttaaatagatcagaaactatgactaaataatatctcaatttttccccnnnnnnnnn |
304 |
Q |
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| T |
34084759 |
taatgaatacatataatccaaataagtatcaaaccattatagatttaaatagatcagaaactatgactaaataatatctcaatttttccccaaaaaaaaa |
34084858 |
T |
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| Q |
305 |
t-----gaattagatcaatttcaaacctcaaatttctcatgcagcattaatttccatgtgtgacttcaataccttcacatgtccttcacacacgtctacc |
399 |
Q |
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| T |
34084859 |
aaaaaagaattagatcaatttcaaacctcaaatttctcatgcagcattaatttccatgtgtgacttcaatgccttcacatgtccttcacacacgtctacc |
34084958 |
T |
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| Q |
400 |
atcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatg |
468 |
Q |
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| T |
34084959 |
atcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatg |
34085027 |
T |
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