View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20347_low_10 (Length: 449)

Name: NF20347_low_10
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20347_low_10
NF20347_low_10
[»] chr4 (25 HSPs)
chr4 (1-299)||(4047698-4047995)
chr4 (1-162)||(16451631-16451793)
chr4 (326-432)||(4047567-4047671)
chr4 (1-150)||(4190149-4190299)
chr4 (1-150)||(38551543-38551693)
chr4 (1-150)||(2016067-2016216)
chr4 (17-144)||(27283652-27283779)
chr4 (1-139)||(45924322-45924461)
chr4 (5-150)||(35320174-35320320)
chr4 (1-150)||(45029301-45029451)
chr4 (1-150)||(15543115-15543266)
chr4 (1-153)||(51538349-51538502)
chr4 (1-150)||(40727732-40727882)
chr4 (1-150)||(35158425-35158576)
chr4 (5-150)||(28311170-28311316)
chr4 (1-132)||(43842158-43842290)
chr4 (58-149)||(168882-168973)
chr4 (1-150)||(49374031-49374181)
chr4 (58-150)||(55136373-55136465)
chr4 (1-75)||(38218548-38218623)
chr4 (1-150)||(28781051-28781201)
chr4 (1-90)||(56463922-56464012)
chr4 (1-137)||(16023593-16023730)
chr4 (1-106)||(30003362-30003468)
chr4 (1-150)||(52417214-52417363)
[»] chr1 (21 HSPs)
chr1 (5-150)||(49851421-49851567)
chr1 (1-150)||(3517856-3518006)
chr1 (1-122)||(52632632-52632754)
chr1 (1-150)||(14587624-14587774)
chr1 (1-122)||(50262202-50262323)
chr1 (1-134)||(38860406-38860539)
chr1 (1-153)||(29961101-29961254)
chr1 (1-72)||(41086191-41086262)
chr1 (1-72)||(41090959-41091030)
chr1 (2-122)||(12700825-12700946)
chr1 (1-89)||(23984311-23984400)
chr1 (1-145)||(37952013-37952157)
chr1 (1-144)||(48965172-48965316)
chr1 (4-150)||(44496193-44496340)
chr1 (1-74)||(33801145-33801219)
chr1 (1-150)||(42882870-42883020)
chr1 (1-150)||(44757812-44757961)
chr1 (1-164)||(27216496-27216661)
chr1 (9-121)||(41900570-41900682)
chr1 (5-71)||(11952700-11952767)
chr1 (58-135)||(12528174-12528251)
[»] chr8 (12 HSPs)
chr8 (1-122)||(13546464-13546586)
chr8 (1-122)||(13677887-13678009)
chr8 (1-151)||(586686-586837)
chr8 (1-150)||(43098820-43098969)
chr8 (1-150)||(20091274-20091424)
chr8 (1-122)||(32337548-32337670)
chr8 (1-151)||(627085-627237)
chr8 (1-139)||(6347019-6347158)
chr8 (1-150)||(29544113-29544261)
chr8 (1-150)||(40105529-40105679)
chr8 (58-150)||(37098105-37098197)
chr8 (62-122)||(28284214-28284274)
[»] chr6 (3 HSPs)
chr6 (1-153)||(9305238-9305391)
chr6 (1-150)||(31271057-31271206)
chr6 (5-150)||(438752-438898)
[»] chr5 (15 HSPs)
chr5 (1-135)||(25977406-25977541)
chr5 (1-111)||(26278786-26278897)
chr5 (1-150)||(37030529-37030679)
chr5 (1-150)||(12723378-12723528)
chr5 (51-150)||(8197115-8197214)
chr5 (1-150)||(16513874-16514024)
chr5 (1-153)||(27114008-27114161)
chr5 (1-150)||(12784861-12785011)
chr5 (1-150)||(18808686-18808836)
chr5 (101-150)||(8551281-8551330)
chr5 (58-150)||(13654689-13654781)
chr5 (1-136)||(37883148-37883287)
chr5 (1-90)||(8301043-8301133)
chr5 (51-144)||(9715624-9715717)
chr5 (93-150)||(13822445-13822502)
[»] chr2 (12 HSPs)
chr2 (1-150)||(15911490-15911640)
chr2 (1-150)||(13278402-13278556)
chr2 (1-150)||(18137303-18137451)
chr2 (1-150)||(38707495-38707645)
chr2 (1-150)||(1210206-1210360)
chr2 (1-139)||(31994352-31994490)
chr2 (1-150)||(6402590-6402740)
chr2 (1-150)||(45116792-45116941)
chr2 (1-150)||(7943017-7943165)
chr2 (27-153)||(17304595-17304721)
chr2 (10-68)||(1114555-1114614)
chr2 (62-122)||(21650006-21650066)
[»] chr7 (12 HSPs)
chr7 (5-150)||(43457894-43458040)
chr7 (1-150)||(46254573-46254723)
chr7 (1-153)||(44862721-44862874)
chr7 (1-150)||(35794184-35794334)
chr7 (9-74)||(42321415-42321481)
chr7 (1-121)||(14816927-14817047)
chr7 (1-121)||(15263923-15264043)
chr7 (1-153)||(34848155-34848308)
chr7 (1-72)||(25529384-25529456)
chr7 (60-153)||(26791704-26791797)
chr7 (5-70)||(33950717-33950783)
chr7 (60-150)||(36312420-36312510)
[»] chr3 (12 HSPs)
chr3 (1-150)||(41193997-41194147)
chr3 (1-149)||(39353013-39353162)
chr3 (1-150)||(31765477-31765628)
chr3 (1-150)||(32529512-32529663)
chr3 (4-150)||(40936924-40937071)
chr3 (24-150)||(53814658-53814784)
chr3 (50-150)||(36403010-36403110)
chr3 (1-118)||(6936214-6936333)
chr3 (1-72)||(49166384-49166456)
chr3 (79-150)||(44207939-44208010)
chr3 (24-150)||(39586280-39586406)
chr3 (1-106)||(41174571-41174676)
[»] scaffold1301 (1 HSPs)
scaffold1301 (1-69)||(1449-1518)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 4047995 - 4047698
Alignment:
Q  1 catcaaagaaagacacaaaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagagg 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |     
T  4047995 catcaaagaaagacacaaaaaacacataacatctggtctagatttcattatccggatatcactaacaatctgatttgaattatataatccaaatcaggga 4047896  T
Q  101 tatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaatatttctctaaagtttttcatgtcttggacttggattgagacatggtca 200  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047895 tatttttagaaattttgcagggcgtgcaagaaggcagcaaggtgggaaaaatatttctctaaagtttttcatgtcttggacttggattgagacatggtca 4047796  T
Q  201 tctcaccctaaatttttattttnnnnnnnntattagcaaataatgtacgcctaatcaagaatgtcacattttgtnnnnnnngaaagaatgtcacatcca 299  Q
    ||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  4047795 tctcaccctaaatttttatttt-aaaaaaatatcagcaaataatgtacgcctaatcaagaatgtcacattttgtaaaaaaagaaagaatgtcacatcca 4047698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 16451793 - 16451631
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||  || |||| | ||||||||||||||| |  | ||||||||||||| ||||  |    
T  16451793 catcaaagaaagacacaaaaaagcacataacatctggtctggattttgttttccgaaaatcactaacaatctggtccggattatataatccagaccaagg 16451694  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaatatttctctaa 162  Q
    ||||||||||||||||||||| | | || ||||||||||| |||||||||| || ||||||||    
T  16451693 gtatttttgaaaattttgcagagcgcgcgagaaggcagcagggtgggaaaagtaattctctaa 16451631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 4047671 - 4047567
Alignment:
Q  326 atagtctcattctatattaagtgtccagaactattttaaagggtctttnnnnnnnntctattttaagtggtgacatctgtcttatttgatttaaaaataa 425  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||    
T  4047671 atagtctcattctatat-aagtgtccagaactattttaaagggtctttaaaaaaaat-tattttaagtggtgacatctgtcttatttgatttaaaaataa 4047574  T
Q  426 ctggttt 432  Q
    |||||||    
T  4047573 ctggttt 4047567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 4190149 - 4190299
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||| ||| |||||| ||| ||||||||||| |  | |||||||||||| |||||| |    
T  4190149 catcaaagaaagacacaaaaaagcacataacatttggtccgaatttaattttccggaaatcgctaacaatctggtcaggattatataatccgaaccaggg 4190248  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| |||||||| |||| | |||||||| || || ||||||||||    
T  4190249 gtatttttggaaattttgaagggcgcgcaagaagacaacagggtgggaaaa 4190299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 38551543 - 38551693
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||| ||||||||||||||| |||||||||||||||| | ||||| || |||| | ||||||||||||||| |  | ||||||||||||  ||||| |    
T  38551543 catcaaggaaagacacaaaaaagcacataacatctggtccgtatttcgttttccgaaaatcactaacaatctggtccggattatataatccggaccaggg 38551642  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| ||||||||||||| | || ||||||||||| ||||||||||    
T  38551643 gtatttttggaaattttgcagggcgcgcgagaaggcagcagggtgggaaaa 38551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 2016067 - 2016216
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| || |||||||||||||||||||||  |  | ||||||||||||| ||||  |    
T  2016067 catcaaagaaagacacaaaaaatcacataacatctggtccggatttcgttttccggatatcactaacaatctagtccggattatataatccataccatgg 2016166  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| ||||| || | || | |||||||||||||| ||||||||||    
T  2016167 gtatttttgtaaattatgta-ggcgcgcaagaaggcagcagggtgggaaaa 2016216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 27283652 - 27283779
Alignment:
Q  17 aaaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaatttt 116  Q
    |||||||||||||||||||||| | |||| ||| | |||| |||| |||||||||  || | |||||||||||| |||||| |||||||| |||||||||    
T  27283652 aaaaaacacataacatctggtccggatttaatttttcggaaatcattaacaatctagttcggattatataatccgaaccaggggtattttagaaaatttt 27283751  T
Q  117 gcagggtgtgcaagaaggcagcaaggtg 144  Q
    ||||||  | | ||||||||||||||||    
T  27283752 gcagggcatacgagaaggcagcaaggtg 27283779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 45924461 - 45924322
Alignment:
Q  1 catcaaagaaagacacaaaaaacacataacatctggtctgaatttcattatccgg-atatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||  ||||| | |||||||||||| || |  | ||||||||||||  ||||| |    
T  45924461 catcaaagaaagacacaaaaagcacataacatctggtccgaatttaatgttccggaaaatcactaacaatttggtccggattatataatccggaccaggg 45924362  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagca 139  Q
    |||||||| ||||||||||| || | || |||||||||||    
T  45924361 gtatttttaaaaattttgcatggcgcgcgagaaggcagca 45924322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 35320174 - 35320320
Alignment:
Q  5 aaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtat 103  Q
    |||||||||||||||||| |||||||||||||||| | |||  || ||||  | ||||||||||||||| |  | ||||||||||||  ||||| |||||    
T  35320174 aaagaaagacacaaaaaagcacataacatctggtccggattatataatccaaaaatcactaacaatctggtccggattatataatccggaccaggggtat 35320273  T
Q  104 ttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||| ||||||||||||| | || |||||||| |||||||| ||||    
T  35320274 ttttggaaattttgcagggcgcgcgagaaggcaccaaggtggtaaaa 35320320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 45029301 - 45029451
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| |||||||  | | |||| |||||||||||||||||  ||||||| ||||||  || || |    
T  45029301 catcaaagaaagacacagaaaattacataacatctggtccgaatttctgttttcggaaatcactaacaatctgatccgaattatgtaatccggactaggg 45029400  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||||| |  ||||||||||| ||||| ||||    
T  45029401 gtattttagtaaattttgcagggtgcgggagaaggcagcagggtggaaaaa 45029451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 15543115 - 15543266
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggt-ctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    ||||||||||||||| |||||| |||||||||||| || | |||||| ||| |||| | ||||||||||||||  | || |||||||||||   ||||      
T  15543115 catcaaagaaagacaaaaaaaagcacataacatcttgttccgaatttaattttccgaaaatcactaacaatctagtctggattatataatctggaccatg 15543214  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||||||| |||||||| |||| | || ||||||||||||||||||||||    
T  15543215 ggtatttttggaaattttgtagggcgcgcgagaaggcagcaaggtgggaaaa 15543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 51538502 - 51538349
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||  | |||||| ||||||||||||||  |  ||||||| ||||||  ||||| |    
T  51538502 catcaaagaaagacacagaaaattacataacatctggtccggatttctgtttccggaaatcactaacaatctagtccgaattatgtaatccggaccaggg 51538403  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
     |||| | | |||||||||||||  ||| ||||||||||| |||||||||||||    
T  51538402 ttattgtcgtaaattttgcagggcatgcgagaaggcagcagggtgggaaaaata 51538349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 40727882 - 40727732
Alignment:
Q  1 catcaaagaaagacacaaaaaaca-cataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| |||| | |||||||||||||||| |||||  | |||| | ||||||||||||||| |    ||| ||||||||  ||||| |    
T  40727882 catcaaagaaagacacagaaaataacataacatctggtctggatttctgtttccgaaaatcactaacaatctggtccagattgtataatccggaccaggg 40727783  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | |||||||||||||| ||| || |||||||| |||| |||||    
T  40727782 gtattttagtaaattttgcagggtatgcgaggaggcagcagggtgagaaaa 40727732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 35158576 - 35158425
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcat-tatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    ||||||||||||||||| ||||  ||||||||||||||| ||||||  | | |||||| || |||||||||||| |  | ||||| ||||||  |||||     
T  35158576 catcaaagaaagacacagaaaattacataacatctggtccgaattttctgtttccggaaataactaacaatctggtccggattatgtaatccggaccagg 35158477  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||||| | ||||||||||||| | || || |||||||| ||||||||||    
T  35158476 ggtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgggaaaa 35158425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 28311170 - 28311316
Alignment:
Q  5 aaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtat 103  Q
    |||||||||||||||||| | |||||||||||||| | |||  ||| |||  | ||||||||||||||| |  | ||||||| |||| |||||| ||||     
T  28311170 aaagaaagacacaaaaaaacgcataacatctggtccggattaaattttccaaaaatcactaacaatctggtccggattatattatccgaaccaggggtaa 28311269  T
Q  104 ttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||  ||||||||||||  | || ||||||||||| ||||||||||    
T  28311270 tttttgaaattttgcaggacgcgcgagaaggcagcagggtgggaaaa 28311316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43842158 - 43842290
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||| | | |||||  | |||| | |||||||||||||||||  | ||||| ||||| | ||||  |    
T  43842158 catcaaagaaagacacagaaaattacataacatctgggccggatttctgtttccgaaaatcactaacaatctgatccggattatgtaatctagaccaagg 43842257  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaa 132  Q
    ||||||| | |||||||||||||||||| ||||    
T  43842258 gtattttagtaaattttgcagggtgtgcgagaa 43842290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 168882 - 168973
Alignment:
Q  58 atcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaa 149  Q
    ||||||||||||||| |  |||||||||||||| |||||| ||||| ||||||||||||| ||||   || ||||||||| | |||||||||    
T  168882 atcactaacaatctggtccgaattatataatccgaaccaggggtatatttgaaaattttgtagggcacgcgagaaggcagtagggtgggaaa 168973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 49374181 - 49374031
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| | |||||||| ||||| | ||||  || | |||  |||| |||||||||  |  | ||| |||||||   ||||| |    
T  49374181 catcaaagaaagacacaaaaaagcgcataacatatggtccggattttgtttttcggggatcattaacaatctcgtccggattgtataatctggaccaggg 49374082  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||||||||||||||||| | || |||||| |||| ||||||||||    
T  49374081 gtatttttgaaaattttgcagggcgcgcgagaaggtagcagggtgggaaaa 49374031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 55136465 - 55136373
Alignment:
Q  58 atcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||||||||||||||  | ||||| |||||| || ||| |||||||| | ||||||||||||||| | ||| |||||||| ||||| ||||    
T  55136465 atcactaacaatctgatccggattatgtaatccgaatcaggggtattttagtaaattttgcagggtgcgaaaggaggcagcagggtggaaaaa 55136373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38218548 - 38218623
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatt 75  Q
    ||||||||||||||||||||||  ||||||||||||||| | |||||  | || ||| ||||||||||||||||||    
T  38218548 catcaaagaaagacacaaaaaattacataacatctggtccggatttctgtttctggaaatcactaacaatctgatt 38218623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 28781051 - 28781201
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||  | ||| || ||||||||||||||| |  | |||   ||||||  ||||| |    
T  28781051 catcaaagaaagacacagaaaattacataacatctggtccggatttctgtttccagaaatcactaacaatctggtccggattgcgtaatccggaccaggg 28781150  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | |||||||||||||||  | || |||||||| |||| |||||    
T  28781151 gtattttagtaaattttgcagggtgcacgaggaggcagcatggtgagaaaa 28781201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 56463922 - 56464012
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatcc 90  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||  | |||| | |||||||||||||||||| | |||||| |||||    
T  56463922 catcaaagaaagacacagaaaattacataacatctggtccggatttctgtttccgaaaatcactaacaatctgattcggattatacaatcc 56464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 16023730 - 16023593
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaat-ttcattatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    ||||||||||||||||| ||||  |||||| |||||||| | || ||  ||| ||||| |||||||||||| |  |  ||||||| |||||| ||||||     
T  16023730 catcaaagaaagacacagaaaattacataagatctggtccggatatttgtta-ccggaaatcactaacaatattgtccgaattatgtaatccgaaccagg 16023632  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcag 137  Q
    |||||||| | ||||||||||||||| || |||| ||||    
T  16023631 ggtattttagtaaattttgcagggtgcgcgagaacgcag 16023593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30003468 - 30003362
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||  | ||| || || |||||||||||| |  | ||||||||||||  |||||||    
T  30003468 catcaaagaaagacacagaaaattacataacatctggtccggatttctgtttccagaaataactaacaatctggtccggattatataatccggaccagag 30003369  T
Q  100 gtatttt 106  Q
     ||||||    
T  30003368 atatttt 30003362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 52417214 - 52417363
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||| ||||||  ||||||||| ||||| | |||||  | |||||| | ||||||||||||| |  | ||||  ||||||  ||||| |    
T  52417214 catcaaagaaagacataaaaaattacataacatatggtccggatttctgtttccggaaa-cactaacaatctggtccggattacgtaatccggaccaggg 52417312  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | |||||||||||||   || ||||||||||| ||| ||||||    
T  52417313 gtattttagtaaattttgcagggcacgcgagaaggcagcagggtaggaaaa 52417363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 49851567 - 49851421
Alignment:
Q  5 aaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtat 103  Q
    |||||||||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||  |||||||||||| |  ||||| |||||    
T  49851567 aaagaaagacacaaaaaagcacataacatctggtccgaatttctttttccggatatcactaacaatctgatccgaattatataattcggaccagcggtat 49851468  T
Q  104 ttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||| |||||||| |||| | || ||||||||||| ||||||||||    
T  49851467 ttttggaaattttgaagggcgcgcgagaaggcagcagggtgggaaaa 49851421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 3517856 - 3518006
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| |||||||  | |||||| |||||||||||||||||  | ||||| | ||||  |||||      
T  3517856 catcaaagaaagacacagaaaattacataacatctggtccgaatttctgtttccggaaatcactaacaatctgatccggattatgtgatccggaccagga 3517955  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||||| || ||||||||||| ||||||||||    
T  3517956 gtattttagtaaattttgcagggtgcgcgagaaggcagcagggtgggaaaa 3518006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 52632632 - 52632754
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||||| ||| |||||| |||||||||||||||||  | |||||||||||   ||||| |    
T  52632632 catcaaagaaagacaccaaaaagcgcataatatctggtccgaatttaattttccggaaatcactaacaatctgatccggattatataatctggaccaggg 52632731  T
Q  100 gtatttttgaaaattttgcaggg 122  Q
    |||||||||||||||||||||||    
T  52632732 gtatttttgaaaattttgcaggg 52632754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 14587624 - 14587774
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||  | |||||| |||||||||||||||||  | ||||| ||||||  ||||  |    
T  14587624 catcaaagaaagacacagaaaattacataacatctggtccggatttctgtttccggaaatcactaacaatctgatccggattatgtaatccggaccatgg 14587723  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||||| |  ||||||||||| ||||||||||    
T  14587724 gtattttagtaaattttgcagggtgcgtgagaaggcagcagggtgggaaaa 14587774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 50262202 - 50262323
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| || | |||| | ||||||||||| |||  ||||||||||||||| || || |    
T  50262202 catcaaagaaagacacaaaaaatcacataacatctggtccggatttcgtttttcggaaa-cactaacaatcggatccgaattatataatccagactaggg 50262300  T
Q  100 gtatttttgaaaattttgcaggg 122  Q
    ||||||||| |||||||||||||    
T  50262301 gtatttttggaaattttgcaggg 50262323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 38860539 - 38860406
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||| ||||||||||||||||| |||||||||||||||| | ||||| || |||||| | ||||||||||| | |  | |||||||||||| ||| || |    
T  38860539 catctaagaaagacacaaaaaatcacataacatctggtccggatttcgttttccggaaa-cactaacaatcgggtccggattatataatccgaacaaggg 38860441  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaagg 134  Q
    ||||||||| ||||||||||||| |||| ||||||    
T  38860440 gtatttttggaaattttgcagggcgtgcgagaagg 38860406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 29961254 - 29961101
Alignment:
Q  1 catcaaagaaagacaca-aaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||| | |||||||||||||||||||||   |||||  | |||||| ||||||||||||||| |  | ||||| ||||||  || || |    
T  29961254 catcaaagaaagacaaagaaaaacacataacatctggtccagatttctgtttccggaaatcactaacaatctggtccggattatgtaatccggactaggg 29961155  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
    ||||||| | |||||| ||| |||| || ||||||||||| |||||||||||||    
T  29961154 gtattttagtaaatttcgcatggtgcgcgagaaggcagcagggtgggaaaaata 29961101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41086262 - 41086191
Alignment:
Q  1 catcaaagaaagacacaaaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctg 72  Q
    |||||| |||| ||||||||| | |||||||||||||| ||||||| || ||||||||||||||||||||||    
T  41086262 catcaatgaaaaacacaaaaagcgcataacatctggtccgaatttcgttttccggatatcactaacaatctg 41086191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41091030 - 41090959
Alignment:
Q  1 catcaaagaaagacacaaaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctg 72  Q
    |||||| |||| ||||||||| | |||||||||||||| ||||||| || ||||||||||||||||||||||    
T  41091030 catcaatgaaaaacacaaaaagcgcataacatctggtccgaatttcgttttccggatatcactaacaatctg 41090959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 12700825 - 12700946
Alignment:
Q  2 atcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagagg 100  Q
    |||||||||||||||||||||  ||||||||||||||| | |||||  | |||||| |||||||||||||| |     ||||| |||||| ||||||||     
T  12700825 atcaaagaaagacacaaaaaattacataacatctggtccggatttctgtttccggaaatcactaacaatctaacccagattatgtaatccgaaccagaga 12700924  T
Q  101 tatttttgaaaattttgcaggg 122  Q
    |||||| | |||||||||||||    
T  12700925 tattttagtaaattttgcaggg 12700946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23984311 - 23984400
Alignment:
Q  1 catcaaagaaagacacaaaa-aacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatc 89  Q
    |||||||||||||||||||| |||||||||||||||||| | || || || ||| || ||||||||||||||| | || |||||||||||    
T  23984311 catcaaagaaagacacaaaaaaacacataacatctggtccggatatcgttttcctgacatcactaacaatctggtctggattatataatc 23984400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 37952157 - 37952013
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  |||||| ||||||||   |||||  | | |||| |||||||||||||||||| | ||||| |||||| ||||| |     
T  37952157 catcaaagaaagacacagaaaattacataatatctggtccagatttctgttttcggaaatcactaacaatctgattcggattatgtaatccgaacca-at 37952059  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgg 145  Q
    ||||||| | |||||||||||||||  | ||||||||||| |||||    
T  37952058 gtattttagtaaattttgcagggtgcacgagaaggcagcagggtgg 37952013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48965172 - 48965316
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  |||||| |||||||| | |||||  | ||| || ||||||||||||||| |  | ||||| |||||| || ||| |    
T  48965172 catcaaagaaagacacagaaaattacataatatctggtccggatttctgtttccagaaatcactaacaatctggtccggattatgtaatccgaatcagtg 48965271  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtg 144  Q
    ||||||| | ||||||| ||||| | |||||||||||||| ||||    
T  48965272 gtattttagtaaattttacagggcgcgcaagaaggcagcagggtg 48965316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 44496340 - 44496193
Alignment:
Q  4 caaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggta 102  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||  | |||||| ||||||||||||||| |  | |||| ||||| |  ||||| | ||    
T  44496340 caaagaaagacacataaaattacataacatctggtctggatttctgtttccggaaatcactaacaatctggtccggattacataattcggaccagggtta 44496241  T
Q  103 tttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||   ||||||||||||| | || |||||||||||  |||||||||    
T  44496240 ttttaataaattttgcagggcgcgcgagaaggcagcatagtgggaaaa 44496193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33801219 - 33801145
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgat 74  Q
    ||||||||||||||||| ||||  |||||| |||||||| |||||||  | |||||| |||||||||||||||||    
T  33801219 catcaaagaaagacacagaaaattacataatatctggtccgaatttctgtttccggaaatcactaacaatctgat 33801145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 42882870 - 42883020
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||| | ||||||  ||||||||||||||| |||||||  | |||| | || |||||||||||| |    ||||| | |||| || ||| |    
T  42882870 catcaaagaaagataaaaaaaattacataacatctggtccgaatttctgtttccgaaaataactaacaatctggtccagattatgtgatccgaaacaggg 42882969  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||  | || || |||||||||||||||||||    
T  42882970 gtattttagtaaattttgcaggacgcgcgaggaggcagcaaggtgggaaaa 42883020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 44757812 - 44757961
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||| ||||| ||||  ||||||||||||| | | |||||  | |||||| | ||||||||||||| || | ||||  |||||  ||| || |    
T  44757812 catcaaagaaatacacagaaaattacataacatctggcccggatttctgtttccggaaa-cactaacaatctggttcggattacgtaatctgaactaggg 44757910  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||| ||||| |||||||||| | || ||||||||||| ||||||||||    
T  44757911 gtatttatgaaatttttgcagggcgcgcgagaaggcagcatggtgggaaaa 44757961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 27216661 - 27216496
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataaca-tctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    |||||||||||||||| ||||| ||||||||| | ||||| ||||||| || |||||| |||| ||||||| |  |    ||||||||  ||  | ||||    
T  27216661 catcaaagaaagacactaaaaagcacataacaatatggtccgaatttcgttttccggaaatcaataacaatattgtcctgattatatagcccggatcaga 27216562  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaatatttctctaaag 164  Q
    | ||||||||||| |||||||||| | || |||| |||| |||||||||||| ||  |||||||||    
T  27216561 gatatttttgaaatttttgcagggcgcgcgagaaagcagtaaggtgggaaaagtaaatctctaaag 27216496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 41900570 - 41900682
Alignment:
Q  9 aaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtattttt 107  Q
    |||||||||||||| |||||||||||||||| | |||| ||| |||||| |||| |||||| ||  |  ||||||||||||||  | ||| | |||||||    
T  41900570 aaagacacaaaaaagcacataacatctggtccggatttaatt-tccggaaatcattaacaaccttgtccgaattatataatccggatcagggatattttt 41900668  T
Q  108 gaaaattttgcagg 121  Q
    | ||||||||||||    
T  41900669 ggaaattttgcagg 41900682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 11952700 - 11952767
Alignment:
Q  5 aaagaaagacacaaaa-aacacataacatctggtctgaatttcattatccggatatcactaacaatct 71  Q
    ||||||||| |||||| |||||||||||||||||| | |||| ||| |||| | ||||||||||||||    
T  11952700 aaagaaagatacaaaaaaacacataacatctggtccggatttaattttccgcaaatcactaacaatct 11952767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 12528251 - 12528174
Alignment:
Q  58 atcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggc 135  Q
    |||||||||||||||||  |  |||| ||||||  || || |||||||||||||||||||||||| | || |||||||    
T  12528251 atcactaacaatctgatccgggttatgtaatccggacgaggggtatttttgaaaattttgcagggcgcgcgagaaggc 12528174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 13546464 - 13546586
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||| ||||||||||||||| | || |||||||||||| |||||| |    
T  13546464 catcaaagaaagacacaaaaaaccacataacatctggtccggatttaattttccggaaatcactaacaatctggtctgtattatataatccgaaccaggg 13546563  T
Q  100 gtatttttgaaaattttgcaggg 122  Q
    ||||||||| |||||||||||||    
T  13546564 gtatttttggaaattttgcaggg 13546586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13678009 - 13677887
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||| ||||||||||||||| | || |||||||||||| |||||| |    
T  13678009 catcaaagaaagacacaaaaaaccacataacatctggtccggatttaattttccggaaatcactaacaatctggtctgtattatataatccgaaccaggg 13677910  T
Q  100 gtatttttgaaaattttgcaggg 122  Q
    ||||||||| |||||||||||||    
T  13677909 gtatttttggaaattttgcaggg 13677887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 586686 - 586837
Alignment:
Q  1 catcaaagaaagacacaaaa-aacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||| || ||  |||||||||||||||||| || | |||||||||| || |||| ||    
T  586686 catcaaagaaagacacaaaaaaacacataacatctggtccggatttctttgtctagatatcactaacaatctgcttcggattatataattcagaccacag 586785  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaa 151  Q
    ||||||||| ||||||||||||| |||| ||||  ||||| |||||| ||||    
T  586786 gtatttttggaaattttgcagggcgtgcgagaatacagcagggtggggaaaa 586837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 43098820 - 43098969
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| ||||||||||||||||   |||| ||| || ||| ||||||||||||||| | || |||||||||||| |||| | |    
T  43098820 catcaaagaaagacacaaaaaagcacataacatctggtccagatttaattttc-ggaaatcactaacaatctggtctggattatataatccgaaccgggg 43098918  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| |||||||| |||||| || ||||||||||| ||||||||||    
T  43098919 gtatttttggaaattttgaagggtgcgcgagaaggcagcagggtgggaaaa 43098969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 20091424 - 20091274
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| | |||||||||||||| | |||| ||| |||||| ||||||||||||||| |  | ||||  ||||||| ||||| |    
T  20091424 catcaaagaaagacacaaaaaaacccataacatctggtccggatttaattttccggaaatcactaacaatctggtccggattacgtaatccagaccaggg 20091325  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| ||||||||||||| | || ||||||||||| |||| |||||    
T  20091324 gtatttttggaaattttgcagggcgcgcgagaaggcagcagggtgtgaaaa 20091274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32337670 - 32337548
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| || |||||||||| ||||||||||| |    |||||||||||| |||||  |    
T  32337670 catcaaagaaagacacaaaaaagcacataacatctggtccggatttctttgtccggatatcgctaacaatctgctccagattatataatccgaaccaagg 32337571  T
Q  100 gtatttttgaaaattttgcaggg 122  Q
    ||||||||| |||||||||||||    
T  32337570 gtatttttggaaattttgcaggg 32337548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 627237 - 627085
Alignment:
Q  1 catcaaagaaagacacaaaaaa--cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    ||||||||||||||||||||||  |||||||||||||||| | ||||| || ||  |||||||||||||||||| || | |||||||||| || |||| |    
T  627237 catcaaagaaagacacaaaaaaaacacataacatctggtccggatttctttgtctagatatcactaacaatctgcttcggattatataattcagaccaca 627138  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaa 151  Q
     ||||||||| |||||||||||||   || |||| |||||| |||||| ||||    
T  627137 agtatttttggaaattttgcagggcacgcgagaatgcagcagggtggggaaaa 627085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 6347158 - 6347019
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||| || | ||||||||||||||||| || |  | ||||| ||||||  ||||| |    
T  6347158 catcaaagaaagacacaaaaaaacgcataacatctggtccgaatttcgtttttcggatatcactaacaatttgctccggattatgtaatccggaccaggg 6347059  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagca 139  Q
    ||||||| | ||||||||||||| | || |||||||||||    
T  6347058 gtattttagtaaattttgcagggcgcgcgagaaggcagca 6347019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 29544261 - 29544113
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||| |||||||||| |||||||||||||||| | ||||  || |||||| | ||||||||||||| |  | |||||||||| |  ||||| |    
T  29544261 catcaaagaaacacacaaaaaagcacataacatctggtccggatttagtt-tccggaaa-cactaacaatctggtccggattatataattcggaccaggg 29544164  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| ||||||||||||| |  | ||||||||||| ||||||||||    
T  29544163 gtatttttggaaattttgcagggcgcacgagaaggcagcagggtgggaaaa 29544113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 40105529 - 40105679
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||| | |||||  | | |||| || |||||||||||| |  ||||||| ||||||  ||||| |    
T  40105529 catcaaagaaagacacagaaaattacataacatctggtccggatttctgtttgcggaaataactaacaatctggtccgaattatgtaatccggaccaggg 40105628  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||||   ||||||||||||| | || || |||||||| ||||| ||||    
T  40105629 gtattttaataaattttgcagggcgcgcgaggaggcagcagggtggaaaaa 40105679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 37098197 - 37098105
Alignment:
Q  58 atcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||| ||||||||| |  | ||||||||||||| ||||  |||||||||| ||||||||||||| | || |||||||| || ||||||||||    
T  37098197 atcacaaacaatctggtccggattatataatccagaccatgggtatttttggaaattttgcagggcgcgcgagaaggcaacagggtgggaaaa 37098105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 28284274 - 28284214
Alignment:
Q  62 ctaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcaggg 122  Q
    ||||||||||| |||  |||||||||||| |||||||||||||||||  | ||||||||||    
T  28284274 ctaacaatctggtttagattatataatccgaaccagaggtatttttgtcatttttgcaggg 28284214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 9305238 - 9305391
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| ||||||||||||| || | |||| ||| ||||| |||||||||||||||| |    |||||||||||| |||||| |    
T  9305238 catcaaagaaagacacaaaaaagcacataacatctgatccgtatttaattttccggttatcactaacaatctggtccagattatataatccgaaccaggg 9305337  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
    ||||||||| ||||||| ||||| |||| |||||| |||| ||||| |||||||    
T  9305338 gtatttttggaaattttacagggcgtgcgagaaggtagcatggtggaaaaaata 9305391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 31271206 - 31271057
Alignment:
Q  1 catcaaagaaagacaca-aaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||||  | | |||| ||||||||||||||| |  | ||||| |||||| |||||| |    
T  31271206 catcaaagaaagacacagaaaaacacataacatctggtccggatttctgttttcggaaatcactaacaatctggtccggattatgtaatccgaaccaggg 31271107  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
     |||||| | ||||||||||||| | || |||||||||| |||||||||||    
T  31271106 ttattttagtaaattttgcagggcgcgcgagaaggcagc-aggtgggaaaa 31271057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 438898 - 438752
Alignment:
Q  5 aaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtat 103  Q
    ||||||||||||||||||  | |||||||||||||   |||||  | |||  | ||||||||||||||||| |   |||| |||||| |||||  |  ||    
T  438898 aaagaaagacacaaaaaattagataacatctggtccagatttctgtttccataaatcactaacaatctgatctagtttatgtaatccgaaccaaggacat 438799  T
Q  104 ttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||| | ||||||| ||||||| || ||||||||||| ||||||||||    
T  438798 tttagtaaatttttcagggtgcgcgagaaggcagcatggtgggaaaa 438752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 25977406 - 25977541
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||||||||| |||||||||||| ||   ||||| || ||||| |||||||||||||||| |  | ||||||||||||||||||| |    
T  25977406 catcaaagaaagacacaaaaaaccacataacatctgatcctgatttcgttttccgggtatcactaacaatctgctacggattatataatccaaaccaggg 25977505  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggc 135  Q
    ||||||||| ||||||| ||||| | || |||||||    
T  25977506 gtatttttgtaaattttacagggcgcgcgagaaggc 25977541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26278897 - 26278786
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||| || |||||||||||||||||||||| |  | ||||||||||||  ||||| |    
T  26278897 catcaaaaaaagacacaaaaaaacacataacatctggtccgaatttcgttttccggatatcactaacaatctggtccggattatataatccggaccaggg 26278798  T
Q  100 gtatttttgaaa 111  Q
    ||||||| ||||    
T  26278797 gtattttagaaa 26278786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 37030529 - 37030679
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| | |||||||||||||| | ||||  || |||||||||||||||||||||| |  | ||||||||||||  ||||| |    
T  37030529 catcaaagaaagacacaaaaaagcgcataacatctggtccggattttgttttccggatatcactaacaatctggtccggattatataatccggaccaggg 37030628  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||| ||||| ||||||||||||    || ||||||||||| ||||| ||||    
T  37030629 gtacttttggaaattttgcaggacacgcgagaaggcagcatggtggaaaaa 37030679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 12723528 - 12723378
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||  | |||||  | | |||| |||||||||||||||||  | ||||| |||||| |||||| |    
T  12723528 catcaaagaaagacacagaaaattacataacatctggttcggatttctgttttcggaaatcactaacaatctgatccggattatgtaatccgaaccaggg 12723429  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||| | || || |||||||| ||||||||||    
T  12723428 gtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgggaaaa 12723378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 8197214 - 8197115
Alignment:
Q  51 tccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||| ||||||||||||||| |  | ||||| |||||||||||||||||||||| | ||||||||||| | |||| ||||||||||  ||||||||||    
T  8197214 tccggaaatcactaacaatctggtccggattatgtaatccaaaccagaggtattttagtaaattttgcagagcgtgcgagaaggcagcggggtgggaaaa 8197115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 16513874 - 16514024
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||| ||||| | |||||  | | || | |||||||||||||||||  | ||||| ||||||  | || ||    
T  16513874 catcaaagaaagacacagaaaattacataacatatggtccggatttctgttttcgaaaatcactaacaatctgatccggattatgtaatccggatcaaag 16513973  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||| ||||||||||||| | || ||||||||||| ||||||||||    
T  16513974 gtatttttggaaattttgcagggcgcgcgagaaggcagcagggtgggaaaa 16514024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27114161 - 27114008
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| ||||||| ||||| |||| ||||| |  |||| | ||||||||||||||| |  | | |||||||| || || ||||    
T  27114161 catcaaagaaagacacaaaaaaacacataatatctgatctggatttcgtattccgaaaatcactaacaatctggtccggaatatataattcagacaagag 27114062  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
    ||||||||||||||||| || |    ||||||||||| ||  ||||||||||||    
T  27114061 gtatttttgaaaattttacaagacacgcaagaaggcaacagagtgggaaaaata 27114008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 12785011 - 12784861
Alignment:
Q  1 catcaaagaaagacaca-aaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||  | |||||  | | |||| ||||||||| ||| |||  | ||||| |||||| |||||| |    
T  12785011 catcaaagaaagacacagaaaattacataacatctggttcggatttctgttttcggaaatcactaaccatccgatccggattatgtaatccgaaccaggg 12784912  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||  ||||||||| || || |||||||| ||||||||||    
T  12784911 gtattttagtaaatggtgcagggtgcgcgaggaggcagcagggtgggaaaa 12784861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 18808836 - 18808686
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||  |||  ||||||||||||||| |||||||  | ||| || |||||||||||||||||  | ||||| |||||   ||||  |    
T  18808836 catcaaagaaagacacaggaaattacataacatctggtccgaatttctatttccagaaatcactaacaatctgatccggattatgtaatctggaccaagg 18808737  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||| | |  || |||||||| ||||||||||    
T  18808736 gtattttagtaaattttgcagggcgcgtgaggaggcagcatggtgggaaaa 18808686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 8551281 - 8551330
Alignment:
Q  101 tatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||||||||    
T  8551281 tatttttgaaatttttgcagggcgtgcaagaaggcagcagggtgggaaaa 8551330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 13654781 - 13654689
Alignment:
Q  58 atcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||||||||||| || ||||||||||||| ||||| |||||||| | ||||||| ||  |||  | ||||||||||| | ||||||||    
T  13654781 atcactaacaatctgatatggattatataatccagaccaggggtattttagtaaattttacatagtgcacgagaaggcagcaggatgggaaaa 13654689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 37883287 - 37883148
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatc---cggatatcactaacaatctgatttgaattatataatccaaacca 96  Q
    ||||||||||| |||||||||| |||||| ||||||||| | |||| ||| |    | || ||||||||||||||| |  | ||||||||||||  ||||    
T  37883287 catcaaagaaatacacaaaaaagcacataccatctggtccggatttaattttttttcagaaatcactaacaatctggtccgcattatataatccggacca 37883188  T
Q  97 gaggtatttttgaaaattttgcagggtgtgcaagaaggca 136  Q
      | |||||||||||||||||||||| | || ||||||||    
T  37883187 tggttatttttgaaaattttgcagggcgcgcgagaaggca 37883148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8301043 - 8301133
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatcc 90  Q
    ||||||||||||||||| ||||  ||||||||||||||  | |||||  | | |||| |||||||||||||||||  | ||||||||||||    
T  8301043 catcaaagaaagacacagaaaattacataacatctggttcggatttctgttttcggaaatcactaacaatctgatccggattatataatcc 8301133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 9715624 - 9715717
Alignment:
Q  51 tccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtg 144  Q
    |||||| ||||||||||||||| | || |||||||||| |  ||||| ||||||||  ||||| |||||||  | || ||||||||||| ||||    
T  9715624 tccggaaatcactaacaatctggtctggattatataattcggaccaggggtattttcaaaaatattgcaggacgcgcgagaaggcagcagggtg 9715717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 13822445 - 13822502
Alignment:
Q  93 accagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||| |||||||| | ||||||||||||| | || || |||||||||||||||||||    
T  13822445 accaggggtattttagtaaattttgcagggcgcgcgaggaggcagcaaggtgggaaaa 13822502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 15911640 - 15911490
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||||||||| |||||  | |||||| |||||||||||||||||  ||||||| |||| || || ||      
T  15911640 catcaaagaaagacacagaaaattacataacatctggtctggatttctgtttccggaaatcactaacaatctgatccgaattatgtaattcagacaaggt 15911541  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
     |||||| | ||||||||||||||| || ||||||||||| ||||||||||    
T  15911540 atattttagtaaattttgcagggtgcgcgagaaggcagcagggtgggaaaa 15911490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13278556 - 13278402
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataa----catctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaacc 95  Q
    |||||||||||||||||||||| |||||||    ||||||||| | ||||| || | |||||||||||||||||||  |  ||||||||||||||  |||    
T  13278556 catcaaagaaagacacaaaaaaacacataattaacatctggtccggatttcgtttttcggatatcactaacaatctagtccgaattatataatccggacc 13278457  T
Q  96 agaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||||||| ||||||| ||||| | || ||||| ||||| ||||| ||||    
T  13278456 agaggtatttttgtaaattttacagggcgcgcgagaagacagcagggtggaaaaa 13278402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 18137451 - 18137303
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataaca-tctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    |||||||||||| ||||||||| ||||||||| | ||||| ||||||| || |||||   |||||||||||||  |  | |||||||||||| ||||||     
T  18137451 catcaaagaaaggcacaaaaaagcacataacaatatggtccgaatttcgttttccgg---tcactaacaatcttgtccggattatataatccgaaccagg 18137355  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||||||| |||||||||| || | || ||||||||||| ||||||||||    
T  18137354 ggtatttttggaaattttgcaaggcgcgcgagaaggcagcagggtgggaaaa 18137303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 38707495 - 38707645
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||| ||| ||||||   | |||||| |||||||||||||||||  | ||||| ||||||  ||||  |    
T  38707495 catcaaagaaagacacagaaaattacataacatcttgtccgaatttatgtttccggaaatcactaacaatctgatccggattatgtaatccggaccatgg 38707594  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||| ||||||| || |||||||||||  |||||||||    
T  38707595 gtattttagtaaatttttcagggtgcgcgagaaggcagcagagtgggaaaa 38707645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 1210206 - 1210360
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcatt----atccggatatcactaacaatctgatttgaattatataatccaaacc 95  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||  ||     ||| || |||||||||||||||||  ||||||| || |||  |||    
T  1210206 catcaaagaaagacacagaaaagcacataacatctggtctgaatttattttttcttccagaaatcactaacaatctgatacgaattatgtattcccgacc 1210305  T
Q  96 agaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||| ||||||   ||||||| ||||||| | |||||||||||| ||||| ||||    
T  1210306 agagctattttaataaattttacagggtgcgtaagaaggcagcagggtggaaaaa 1210360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 31994352 - 31994490
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||| || || ||| | || |||||||||| |  | ||||||||||||| ||| |||    
T  31994352 catcaaagaaagacacaaaaaagcacataacatctggtccatatttcgttttctggaaagca-taacaatctggtccggattatataatccagacctgag 31994450  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagca 139  Q
    ||||||| |  ||| |||||||| | || |||||||||||    
T  31994451 gtattttagtgaatattgcagggcgcgcgagaaggcagca 31994490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 6402740 - 6402590
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  |||||||||||||||   |||||  | ||||||  ||||||||||| || | | |||||| |||||| |||||| |    
T  6402740 catcaaagaaagacacataaaattacataacatctggtcctgatttctgtttccggaagtcactaacaatatgttcttaattatgtaatccgaaccaggg 6402641  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
     |||||| | ||||||||||||||| || || |||  ||| ||||||||||    
T  6402640 atattttagtaaattttgcagggtgcgcgaggaggaggcatggtgggaaaa 6402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45116941 - 45116792
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  ||||||||||| ||| | |||||    |||||| ||||||||||||||| || | ||||| ||||||  ||||| |    
T  45116941 catcaaagaaagacacataaaattacataacatctagtccggatttctgcttccggaaatcactaacaatctggttcggattatgtaatccggaccag-g 45116843  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
     |||||| | ||||||||||||| | || ||||| ||||| ||||||||||    
T  45116842 ttattttagtaaattttgcagggcgcgcgagaagacagcatggtgggaaaa 45116792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7943017 - 7943165
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| ||| ||| ||||| || | ||||| || |||||| ||||||||||||||  |  | ||||| ||| |   ||||| |    
T  7943017 catcaaagaaagacacaaaaaagcacgtaatatctgatccggatttcgttttccggaaatcactaacaatctagtccggattatgtaaacaggaccaggg 7943116  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||  | || ||||||||||| ||||||||||    
T  7943117 gtattttagtaaattttgcagg--gcgcgagaaggcagcacggtgggaaaa 7943165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 17304721 - 17304595
Alignment:
Q  27 taacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtg 126  Q
    |||||||||||| | |||||  | | |||| ||||||||||||||| ||  |||||| ||||||| ||||| | ||||||    |||||||||||| | |    
T  17304721 taacatctggtccggatttctgttttcggaaatcactaacaatctggttcaaattatgtaatccagaccagggttattttaattaattttgcagggcgcg 17304622  T
Q  127 caagaaggcagcaaggtgggaaaaata 153  Q
    | ||||||||||| ||||| |||||||    
T  17304621 cgagaaggcagcagggtggaaaaaata 17304595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 1114614 - 1114555
Alignment:
Q  10 aagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaa 68  Q
    ||||||||||||| |||||||||||||||| | ||||| || || |||||||||||||||    
T  1114614 aagacacaaaaaagcacataacatctggtccggatttctttgtctggatatcactaacaa 1114555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 21650006 - 21650066
Alignment:
Q  62 ctaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcaggg 122  Q
    ||||||||||| ||   |||||||||||| |||||||||||||||||  | ||||||||||    
T  21650006 ctaacaatctggttcagattatataatccgaaccagaggtatttttgtcatttttgcaggg 21650066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 43458040 - 43457894
Alignment:
Q  5 aaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtat 103  Q
    |||||||||||||||||| ||||||| || ||||| ||||||| |  |||| | ||||||||||||||| || | | ||||||||||  |||||  ||||    
T  43458040 aaagaaagacacaaaaaagcacataatatttggtccgaatttcgtattccgaaaatcactaacaatctggttcggaatatataatccggaccaggagtat 43457941  T
Q  104 ttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||||||||||||| | |  |||||||||||||||| |||||    
T  43457940 ttttgaaaattttgcagggcgcgtgagaaggcagcaaggtgtgaaaa 43457894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 46254723 - 46254573
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||  ||||  |||||||||||||||   |||||  | |||||| |||||||||||||||||  | ||||| ||||||  ||||| |    
T  46254723 catcaaagaaagacacggaaaattacataacatctggtccagatttctgtttccggaaatcactaacaatctgatccggattatgtaatccggaccaggg 46254624  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||| | ||||||||||||| | || || |||||||| ||||||||||    
T  46254623 gtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgggaaaa 46254573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 44862874 - 44862721
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| ||||  |||||||||||||| || |||||  | | |||| || ||||||||| || |  | ||||||||||||| ||||       
T  44862874 catcaaagaaagacacagaaaattacataacatctggtttggatttctgttttcggaaataactaacaatttgctacggattatataatccagaccatga 44862775  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
    ||||||| | ||||||||||||||| || || |||||||||| || ||||||||    
T  44862774 gtattttagtaaattttgcagggtgcgcgaggaggcagcaagatgagaaaaata 44862721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 35794334 - 35794184
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||| | ||||  ||||||||||| ||| | ||||   | ||| || ||||||||||||||| || | ||||| |||||| |||||| |    
T  35794334 catcaaagaaagacagagaaaattacataacatctagtccggatttttgtttccagaaatcactaacaatctggttcggattatgtaatccgaaccaggg 35794235  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
     |||||| | ||||||||||||  |||| ||||||||| | ||||||||||    
T  35794234 ttattttagtaaattttgcaggtcgtgcgagaaggcagtagggtgggaaaa 35794184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 42321415 - 42321481
Alignment:
Q  9 aaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgat 74  Q
    ||||||| |||||| |||||||||||| ||||||||||  || ||||||||||||||||||||||||    
T  42321415 aaagacataaaaaagcacataacatcttgtctgaattttgttttccggatatcactaacaatctgat 42321481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 14816927 - 14817047
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||| |||||| |||||||||||| ||| |||||| ||| |||  | |||||||| |||||| |  | ||||||||||||| | | | |    
T  14816927 catcaaagaaagacaaaaaaaagcacataacatcttgtccgaatttaattttccaaa-atcactaataatctggtccggattatataatccagatcgggg 14817025  T
Q  100 gtatttttgaaaattttgcagg 121  Q
    ||||||||| ||||||||||||    
T  14817026 gtatttttggaaattttgcagg 14817047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 15263923 - 15264043
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||| |||||| |||||||||||| ||| |||||| ||| |||  | |||||||| |||||| |  | ||||||||||||| | | | |    
T  15263923 catcaaagaaagacaaaaaaaagcacataacatcttgtccgaatttaattttccaaa-atcactaataatctggtccggattatataatccagatcgggg 15264021  T
Q  100 gtatttttgaaaattttgcagg 121  Q
    ||||||||| ||||||||||||    
T  15264022 gtatttttggaaattttgcagg 15264043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 34848155 - 34848308
Alignment:
Q  1 catcaaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||| | ||||  ||||||  ||||||| | |||||  | |||||| |||||||||||||||||  |||| || ||||||  ||||| |    
T  34848155 catcaaagaaagacatagaaaattacataaattctggtccggatttctgtttccggaaatcactaacaatctgatccgaataatgtaatccggaccaggg 34848254  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
     ||||||   |||||||| ||| || || ||||||||||| |||||||||||||    
T  34848255 atattttaataaattttgtaggatgcgcgagaaggcagcagggtgggaaaaata 34848308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25529384 - 25529456
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctg 72  Q
    |||||||||||||||||||||| ||||||| |||||||| | ||||| |  |||||| |||||||||||||||    
T  25529384 catcaaagaaagacacaaaaaagcacataatatctggtccggatttcgtattccggaaatcactaacaatctg 25529456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 26791797 - 26791704
Alignment:
Q  60 cactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaaata 153  Q
    ||||||||||||| | || ||||  ||||||||||||| ||||||| || || |||||||||  | || |||||||| || |||||||||||||    
T  26791797 cactaacaatctggtctggattacgtaatccaaaccaggggtatttatggaatttttgcaggacgcgcgagaaggcaacagggtgggaaaaata 26791704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 33950783 - 33950717
Alignment:
Q  5 aaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatc 70  Q
    ||||||||||||||||||  |||||| |||||||| |||||||  | |||||| |||||||||||||    
T  33950783 aaagaaagacacaaaaaattacataagatctggtccgaatttctgtttccggaaatcactaacaatc 33950717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 36312420 - 36312510
Alignment:
Q  60 cactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||||||||||| |  | ||||  |||||| ||||||||||||||| | |||||||| || ||| || || |||||||| ||||||||||    
T  36312420 cactaacaatctggtccggattacgtaatccgaaccagaggtattttagtaaattttgtagagtgcgcgaggaggcagcagggtgggaaaa 36312510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41193997 - 41194147
Alignment:
Q  1 catcaaagaaagacaca-aaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||| |||||||||||||||||||||   ||||| || |||||| ||||||||||||||| |  | ||||| ||||||  ||||||     
T  41193997 catcaaagaaagacacataaaaacacataacatctggtcctgatttcgttttccggaaatcactaacaatctggtccggattatgtaatccggaccagaa 41194096  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
     |||||| | ||||||||| ||| | || ||||||||||| ||||||||||    
T  41194097 atattttagtaaattttgccgggcgcgcgagaaggcagcagggtgggaaaa 41194147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 39353162 - 39353013
Alignment:
Q  1 catcaaagaaagacacaaaaaaca-cataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    |||||||||||||||||||||| | |||||||||||||| | |||| ||| | || | ||||||||||||||  |  | ||||||||||||  ||||| |    
T  39353162 catcaaagaaagacacaaaaaagaacataacatctggtccggatttaatttttcgaaaatcactaacaatcttgtccggattatataatccggaccaggg 39353063  T
Q  100 gtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaa 149  Q
    ||||||||||||||||| ||||| | || | ||||||||| |||||||||    
T  39353062 gtatttttgaaaattttacagggcgcgcgataaggcagcagggtgggaaa 39353013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31765477 - 31765628
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataaca-tctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    |||||||||||  ||||||||| ||||||||| | ||||| | |||||||| ||| || |||||||||||| || |  ||||||||||||||  |||||     
T  31765477 catcaaagaaaagcacaaaaaaacacataacaatatggtccggatttcattttccagaaatcactaacaatttggtccgaattatataatccggaccagg 31765576  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    | |||||||||||||||||||||| | || ||||||||||||| ||| ||||    
T  31765577 gatatttttgaaaattttgcagggcgcgcgagaaggcagcaagatggaaaaa 31765628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 32529663 - 32529512
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcact-aacaatctgatttgaattatataatccaaaccaga 98  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||||  | |||||| |||||| ||||||||| |  ||||||| ||||||  |||||     
T  32529663 catcaaagaaagacacagaaaagcatataacatctggtccgaatttctgtttccggaaatcacttaacaatctggtccgaattatgtaatccggaccagg 32529564  T
Q  99 ggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||||||| | ||||||| |||||   || ||||||||||| ||||| ||||    
T  32529563 ggtattttagtaaattttacagggcacgcgagaaggcagcagggtggaaaaa 32529512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 40937071 - 40936924
Alignment:
Q  4 caaagaaagacacaaaaaac-acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggta 102  Q
    |||||||||||||| ||||  |||||||||||||||   |||||  | |||||||||||||||||||||| || | |||| ||||||  |||||| | ||    
T  40937071 caaagaaagacacagaaaattacataacatctggtccatatttctgtttccggatatcactaacaatctggttcggattacataatctgaaccagggtta 40936972  T
Q  103 tttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    ||||   ||||||| ||||||| || ||||||||| | ||||||||||    
T  40936971 ttttaataaattttacagggtgcgcgagaaggcagtagggtgggaaaa 40936924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 53814784 - 53814658
Alignment:
Q  24 acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggt 123  Q
    ||||||||||||||| | |||||  | |||||| ||||||||||||||| | |||||||| ||| ||  ||||| | |||||| | ||||||||||||      
T  53814784 acataacatctggtccgcatttctgtttccggaaatcactaacaatctggtctgaattatgtaacccggaccagggttattttagtaaattttgcaggac 53814685  T
Q  124 gtgcaagaaggcagcaaggtgggaaaa 150  Q
    | || ||||||||||| ||||||||||    
T  53814684 gcgcgagaaggcagcagggtgggaaaa 53814658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 36403010 - 36403110
Alignment:
Q  50 atccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaa 149  Q
    ||||||| |||||||||||| ||||  | |||||||||||| || ||| |||||||| | ||||||||||||| | || || |||||||| |||| ||||    
T  36403010 atccggaaatcactaacaatttgatccggattatataatccgaatcaggggtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgagaaa 36403109  T
Q  150 a 150  Q
    |    
T  36403110 a 36403110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6936333 - 6936214
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggata-tcactaacaatctgatttgaattatataatccaaaccaga 98  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||  || || ||| |   |||||||||| | |  | ||||||||||| | |||||     
T  6936333 catcaaagaaagacacaaaaaatcacataacatctggtccgaattttgttttctggaaacatactaacaatcgggtccggattatataatcaagaccagg 6936234  T
Q  99 ggtatttttgaaaattttgc 118  Q
    |||||||||| |||||||||    
T  6936233 ggtatttttggaaattttgc 6936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 49166384 - 49166456
Alignment:
Q  1 catcaaagaaagacaca-aaaaacacataacatctggtctgaatttcattatccggatatcactaacaatctg 72  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||| || ||   | |||||||||||||||    
T  49166384 catcaaagaaagacacagaaaaacacataacatctggtccggatttcgttttctaaaaatcactaacaatctg 49166456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 44207939 - 44208010
Alignment:
Q  79 attatataatccaaaccagaggtatttttgaaaattttgcagggtgtgcaagaaggcagcaaggtgggaaaa 150  Q
    |||| ||||||| |||||||||||||| || || |||||||||| | || |||||||| || ||||||||||    
T  44207939 attacataatccgaaccagaggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaa 44208010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 39586406 - 39586280
Alignment:
Q  24 acataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagaggtatttttgaaaattttgcagggt 123  Q
    ||||||||||||||| | |||||  | | |||| ||||||||||||||  | || ||||| ||||||  | ||| | |||||| |||||||||||||||     
T  39586406 acataacatctggtccggatttctgttttcggaaatcactaacaatcttgtatggattatgtaatccggatcagggttattttagaaaattttgcagggc 39586307  T
Q  124 gtgcaagaaggcagcaaggtgggaaaa 150  Q
    | || ||||||||  | ||||||||||    
T  39586306 gcgcgagaaggcaatagggtgggaaaa 39586280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 41174676 - 41174571
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaatctgatttgaattatataatccaaaccagag 99  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||| | |  || ||| ||||| |||||||||||  | ||||| ||||||  ||||| |    
T  41174676 catcaaagaaagacacaaaaaattacataacatctggtctggattac-tattctggaaatcacaaacaatctgatccggattatgtaatccggaccaggg 41174578  T
Q  100 gtatttt 106  Q
    |||||||    
T  41174577 gtatttt 41174571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1518 - 1449
Alignment:
Q  1 catcaaagaaagacacaaaaaa-cacataacatctggtctgaatttcattatccggatatcactaacaat 69  Q
    ||||||||||||||||| |||| | |||||||| ||||| | ||||| || |||||||||||||||||||    
T  1518 catcaaagaaagacacagaaaatcgcataacatatggtccggatttcgttttccggatatcactaacaat 1449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University