View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_11 (Length: 407)
Name: NF20347_low_11
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 1220270 - 1219888
Alignment:
| Q |
1 |
cagagtttctacaatcataataaccacatgcaagattcattattgtgcgcaatatctcttgagatcattaacataataacaatttgattttatttaacnn |
100 |
Q |
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| T |
1220270 |
cagagtttctacaatcataataaccacatgcaagattcattattgtgcgcaatatctcttgagatcattaacataataacaatttgattttatttaacaa |
1220171 |
T |
|
| Q |
101 |
nnnnngatatagtagaaaacttaatatgtaagttccaacaaaaacgaaaagaaactagtattatttggagagagaaaaactcaagtattggacacaataa |
200 |
Q |
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| T |
1220170 |
aaaa-gatatagtagaaaacttaatatgtaagttccaacaaaaacgaaaagaaactagtattatttggagagagaaaaactcaagtattggacacaataa |
1220072 |
T |
|
| Q |
201 |
tatcctccatatcatgtctctaatcacttgaccaaaaaagaccattgaattggatatttggatatgaaatttaggggtgataatttcatccattgatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220071 |
tatcctccatatcatgtctctaatcacttgaccaaaaaagaccattgaattggatatttggatatgaaatttaggggtgataatttcatccattgatcct |
1219972 |
T |
|
| Q |
301 |
ccattcattaattcatctaatttatccaacaacnnnnnnntagttgatagattggattgaatccatccatacagatcaccttgaatcataat |
392 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1219971 |
ccat--------tcatctaatttatccaacaacaaaaaaatagttgatagattggattgaatccatccatacagatcaccttgaatcataat |
1219888 |
T |
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