View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_12 (Length: 388)
Name: NF20347_low_12
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 16138118 - 16138419
Alignment:
| Q |
12 |
aattctgaaggtcaaatgtttattggttgcaataatttcctttttggtttgcattgtatcgaagattccatgaaatagttgttcattagtctatgatttt |
111 |
Q |
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| T |
16138118 |
aattttgaaggtcaaatgtttattggttgcaataattttctttttggtttgcattgtatcgaagattccatgaaatagttgttcattagtctatgatttc |
16138217 |
T |
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| Q |
112 |
tgggtagatcgaattagttgttcttgagtttatgtattttaattatgttcttatttcaattatgtgttaacgcctgcactgcccaagtaatcaatgagag |
211 |
Q |
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| T |
16138218 |
taggtaggtcgaattagctgttcttgagtttatgtattttaattatgttcttatttcaattctgtgttaacgcctgcactgcctaagtattcaatgagag |
16138317 |
T |
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| Q |
212 |
attaaatttcaatttttatttcaacaatgaaaatggcgtttcccaggtttttcaatcaatttgttcagtgtcttttttagctgttggagagaaggaggaa |
311 |
Q |
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| T |
16138318 |
attaaatttcaattcttatttcaacaatgaaaatggcgtttcccaggtttttcaatcaatttgttcagtgtcttttttagccgttggagagaaggaggaa |
16138417 |
T |
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| Q |
312 |
gg |
313 |
Q |
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| T |
16138418 |
gg |
16138419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 16138410 - 16138453
Alignment:
| Q |
327 |
aggaggaaggagcattgtgtgttctgaaatatatctgaagtgtt |
370 |
Q |
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| T |
16138410 |
aggaggaaggagcattgtgtgttctgaaatatatctgaagtgtt |
16138453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 3990494 - 3990534
Alignment:
| Q |
271 |
tttgttcagtgtcttttttagctgttggagagaaggaggaa |
311 |
Q |
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| T |
3990494 |
tttgttcagtttcttatttacctgttggagagaaggaggaa |
3990534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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