View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_13 (Length: 354)
Name: NF20347_low_13
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 655050 - 655387
Alignment:
| Q |
1 |
taatgaatcaggcaaccttattaactttccagcttcaatgaaacctctttctcttctcactacagggtgacctctatatatgcttactcttggacactct |
100 |
Q |
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| T |
655050 |
taatgaatcaggcaaccttattaactttccagcttcaatgaaacctctttctcttctcactacagggtgacctctatatatgcttactcttggacactct |
655149 |
T |
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| Q |
101 |
agtccattacatcttccccaaatctgcttatgttcttcttgattttgcacctttaatacaaactcactaggcatgacctcactcacattaattagatgtc |
200 |
Q |
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| T |
655150 |
agtccattatatcttccccaaatctgcttatgttcttcttgattttgcacctttaatacaaactcactaggcatgacctcactcacattaattagatgtc |
655249 |
T |
|
| Q |
201 |
cgatttcgcgtttctgcataatttcatttaagatggatgcagaaaattcatgaacatgtacatcagtaacatctgcgccgttcatgacaagcaactgaac |
300 |
Q |
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| T |
655250 |
cgatttcacgtttctgcataatttcatttaagatggatgcagaaaattcatgaacatgtacatcagtaacatctgcgccgttcattacaagcaactgaac |
655349 |
T |
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| Q |
301 |
catctccacatgattttctgacatagcaatttggatag |
338 |
Q |
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| T |
655350 |
catctccacatgattttctgacatagcaatttggatag |
655387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 22873311 - 22873214
Alignment:
| Q |
213 |
tctgcataatttcatttaagatggatgcagaaaattcatgaacatgtacatcagtaacatctgcgccgttcatgacaagcaactgaaccatctccaca |
310 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||| |
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| T |
22873311 |
tctgcagaatttcatttaagatggatacagaaaattcatgaacatgtacatcggtaacatctgcaccgttcatgacaagcatctgaaccatgtccaca |
22873214 |
T |
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