View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_15 (Length: 333)
Name: NF20347_low_15
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 83 - 327
Target Start/End: Original strand, 33116549 - 33116793
Alignment:
| Q |
83 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaactttgcatgatagctaatcaagagtattatatatgcagctg |
182 |
Q |
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| T |
33116549 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaaatttgcatgatagctaatcaagagtattatatatgcagctg |
33116648 |
T |
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| Q |
183 |
ttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggtt |
282 |
Q |
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| T |
33116649 |
ttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggtt |
33116748 |
T |
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| Q |
283 |
ggcttgcactgatcggattggctctctatatactgttcttctcac |
327 |
Q |
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| T |
33116749 |
ggcttgcactgattggattggctctctatatactgttcttttcac |
33116793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 1083875 - 1083768
Alignment:
| Q |
19 |
ggatgggactgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1083875 |
ggatgggactgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggc |
1083776 |
T |
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| Q |
119 |
cattttta |
126 |
Q |
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|||||||| |
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| T |
1083775 |
cattttta |
1083768 |
T |
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